Gene name: INP52
Reference locus (S288C): YNL106C
Gene biotype: protein_coding
Description: Polyphosphatidylinositol phosphatase; dephosphorylates a number of phosphatidylinositol phosphates (PtdInsPs, PIPs) to PI; involved in endocytosis; hyperosmotic stress causes translocation to actin patches; synaptojanin-like protein with a Sac1 domain; INP52 has a paralog, INP53, that arose from the whole genome duplication
Top 10 interactors (score): INP51 (0.986); MSS4 (0.984); YMR1 (0.982); RVS161 (0.972); YAP1802 (0.972); STT4 (0.97); EDE1 (0.97); PIK1 (0.967); FAB1 (0.962); RVS167 (0.959); SAC1 (0.958); INP53 (0.958); YAP1801 (0.954); TEP1 (0.948); ABP1 (0.947); PAN1 (0.942); SLA1 (0.938); APL3 (0.929); LSB6 (0.929); END3 (0.925)
Homologues (species, bitscore): SYNJ1 (Homo sapiens, 443.0); Synj1 (Mus musculus, 447.6); synj1 (Danio rerio, 451.8); synj1 (Xenopus tropicalis, 439.9); Synj (Drosophila melanogaster, 424.9); unc-26 (Caenorhabditis elegans, 394.8); ATSAC1B (Arabidopsis thaliana, 214.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:414586-418137:- | gene-YNL106C_AKU4011 | rna-NM_001182944.1_AKU4011 | cds-NP_014293.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:318596-322147:- | gene-YNL106C_BG1 | rna-NM_001182944.1_BG1 | cds-NP_014293.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:425319-428870:- | gene-YNL106C_Bruggeman | rna-NM_001182944.1_Bruggeman | cds-NP_014293.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:468362-471913:- | gene-YNL106C_CAT1 | rna-NM_001182944.1_CAT1 | cds-NP_014293.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:415201-418752:- | gene-YNL106C_CBS1585 | rna-NM_001182944.1_CBS1585 | cds-NP_014293.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:483627-487178:- | gene-YNL106C_CBS436 | rna-NM_001182944.1_CBS436 | cds-NP_014293.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:410674-414225:- | gene-YNL106C_CBS6412 | rna-NM_001182944.1_CBS6412 | cds-NP_014293.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:411677-415228:- | gene-YNL106C_CBS6413 | rna-NM_001182944.1_CBS6413 | cds-NP_014293.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:414795-418346:- | gene-YNL106C_CENPK1137D | rna-NM_001182944.1_CENPK1137D | cds-NP_014293.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:411605-415156:- | gene-YNL106C_EthanolRed | rna-NM_001182944.1_EthanolRed | cds-NP_014293.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:407501-411052:- | gene-YNL106C_FaliES1 | rna-NM_001182944.1_FaliES1 | cds-NP_014293.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000021.1:63883-67434:- | gene-YNL106C_JAY291 | rna-NM_001182944.1_JAY291 | cds-NP_014293.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:421489-425040:- | gene-YNL106C_MUCL30387 | rna-NM_001182944.1_MUCL30387 | cds-NP_014293.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:456879-460430:- | gene-YNL106C_MUCL30388 | rna-NM_001182944.1_MUCL30388 | cds-NP_014293.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:412594-416145:- | gene-YNL106C_MUCL39482 | rna-NM_001182944.1_MUCL39482 | cds-NP_014293.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:416629-420180:- | gene-YNL106C_MUCL42920 | rna-NM_001182944.1_MUCL42920 | cds-NP_014293.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:420913-424464:- | gene-YNL106C_NCIM3186 | rna-NM_001182944.1_NCIM3186 | cds-NP_014293.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:414731-418282:- | gene-YNL106C_NCYC1407 | rna-NM_001182944.1_NCYC1407 | cds-NP_014293.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:413654-417205:- | gene-YNL106C_PE2H3 | rna-NM_001182944.1_PE2H3 | cds-NP_014293.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:413060-416611:- | gene-YNL106C_PE2H4 | rna-NM_001182944.1_PE2H4 | cds-NP_014293.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:420944-424495:- | gene-YNL106C_S288C | rna-NM_001182944.1_S288C | cds-NP_014293.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:5904-9455:- | gene-YNL106C_SA1 | rna-NM_001182944.1_SA1 | cds-NP_014293.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:408373-411924:- | gene-YNL106C_ThermosaccDry | rna-NM_001182944.1_ThermosaccDry | cds-NP_014293.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:427078-430629:- | gene-YNL106C_VR1 | rna-NM_001182944.1_VR1 | cds-NP_014293.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:318192-321743:- | gene-YNL106C_ZTW1 | rna-NM_001182944.1_ZTW1 | cds-NP_014293.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:419284-422844:- | gene-YNL106C_Sparadoxus | rna-NM_001182944.1_Sparadoxus | cds-NP_014293.1_Sparadoxus | 87.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |