Gene name: INO80
Reference locus (S288C): YGL150C
Gene biotype: protein_coding
Description: Putative DNA helicase INO80; ATPase and nucleosome spacing factor; subunit of complex containing actin and actin-related proteins that has chromatin remodeling activity and 3' to 5' DNA helicase activity in vitro; promotes nucleosome shifts in the 3 prime direction; has a role in modulating stress gene transcription
Top 10 interactors (score): ARP5 (0.999); RVB2 (0.999); RVB1 (0.999); ARP4 (0.999); ARP8 (0.999); ACT1 (0.998); IES6 (0.997); IES3 (0.997); TAF14 (0.996); NHP10 (0.995); SWR1 (0.993); IES1 (0.992); IES4 (0.991); IES2 (0.979); IES5 (0.978); SWC4 (0.969); TAF1 (0.963); YAF9 (0.95); BDF1 (0.948); VPS72 (0.935)
Homologues (species, bitscore): INO80 (Homo sapiens, 778.9); Ino80 (Mus musculus, 781.9); ino80 (Danio rerio, 792.7); INO80 (Xenopus tropicalis, 700.3); Ino80 (Drosophila melanogaster, 782.7); ssl-1 (Caenorhabditis elegans, 445.3); INO80 (Arabidopsis thaliana, 706.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:223700-228163:- | gene-YGL150C_AKU4011 | rna-NM_001181015.1_AKU4011 | cds-NP_011365.1_AKU4011 | 98.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:176791-181260:+ | gene-YGL150C_BG1 | rna-NM_001181015.1_BG1 | cds-NP_011365.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:225843-230336:- | gene-YGL150C_Bruggeman | rna-NM_001181015.1_Bruggeman | cds-NP_011365.1_Bruggeman | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:221707-226176:- | gene-YGL150C_CAT1 | rna-NM_001181015.1_CAT1 | cds-NP_011365.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:227082-231545:- | gene-YGL150C_CBS1585 | rna-NM_001181015.1_CBS1585 | cds-NP_011365.1_CBS1585 | 98.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:221677-226134:- | gene-YGL150C_CBS436 | rna-NM_001181015.1_CBS436 | cds-NP_011365.1_CBS436 | 99.7 | 99.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:213292-217755:- | gene-YGL150C_CBS6412 | rna-NM_001181015.1_CBS6412 | cds-NP_011365.1_CBS6412 | 98.9 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:221635-226098:- | gene-YGL150C_CBS6413 | rna-NM_001181015.1_CBS6413 | cds-NP_011365.1_CBS6413 | 98.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:221366-225835:- | gene-YGL150C_CENPK1137D | rna-NM_001181015.1_CENPK1137D | cds-NP_011365.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:213844-218301:- | gene-YGL150C_EthanolRed | rna-NM_001181015.1_EthanolRed | cds-NP_011365.1_EthanolRed | 98.9 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:215090-219547:- | gene-YGL150C_FaliES1 | rna-NM_001181015.1_FaliES1 | cds-NP_011365.1_FaliES1 | 98.9 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000090.1:64907-69376:- | gene-YGL150C_JAY291 | rna-NM_001181015.1_JAY291 | cds-NP_011365.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:223068-227555:- | gene-YGL150C_MUCL30387 | rna-NM_001181015.1_MUCL30387 | cds-NP_011365.1_MUCL30387 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:226183-230670:- | gene-YGL150C_MUCL30388 | rna-NM_001181015.1_MUCL30388 | cds-NP_011365.1_MUCL30388 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:223863-228326:- | gene-YGL150C_MUCL39482 | rna-NM_001181015.1_MUCL39482 | cds-NP_011365.1_MUCL39482 | 98.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:226420-230889:- | gene-YGL150C_MUCL42920 | rna-NM_001181015.1_MUCL42920 | cds-NP_011365.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:221104-225573:- | gene-YGL150C_NCIM3186 | rna-NM_001181015.1_NCIM3186 | cds-NP_011365.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:215327-219816:- | gene-YGL150C_NCYC1407 | rna-NM_001181015.1_NCYC1407 | cds-NP_011365.1_NCYC1407 | 98.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:217210-221679:- | gene-YGL150C_PE2H3 | rna-NM_001181015.1_PE2H3 | cds-NP_011365.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:222205-226674:- | gene-YGL150C_PE2H4 | rna-NM_001181015.1_PE2H4 | cds-NP_011365.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:221104-225573:- | gene-YGL150C_S288C | rna-NM_001181015.1_S288C | cds-NP_011365.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000081.1:29176-33645:+ | gene-YGL150C_SA1 | rna-NM_001181015.1_SA1 | cds-NP_011365.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:215319-219776:- | gene-YGL150C_ThermosaccDry | rna-NM_001181015.1_ThermosaccDry | cds-NP_011365.1_ThermosaccDry | 98.9 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:222124-226593:- | gene-YGL150C_VR1 | rna-NM_001181015.1_VR1 | cds-NP_011365.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:213423-217886:- | gene-YGL150C_ZTW1 | rna-NM_001181015.1_ZTW1 | cds-NP_011365.1_ZTW1 | 98.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:219513-223937:- | gene-YGL150C_Sparadoxus | rna-NM_001181015.1_Sparadoxus | cds-NP_011365.1_Sparadoxus | 89.3 | 98.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |