Gene name: IMP4
Reference locus (S288C): YNL075W
Gene biotype: protein_coding
Description: U3 small nucleolar ribonucleoprotein protein IMP4; Component of the SSU processome; SSU processome is required for pre-18S rRNA processing; interacts with Mpp10p; member of a superfamily of proteins that contain a sigma(70)-like motif and associate with RNAs
Top 10 interactors (score): NOP14 (0.999); UTP20 (0.999); UTP21 (0.999); UTP11 (0.999); NOC4 (0.999); UTP14 (0.999); UTP23 (0.999); DIM1 (0.999); FCF1 (0.999); BUD21 (0.999); KRR1 (0.999); RRP7 (0.999); ENP1 (0.999); SAS10 (0.999); BRX1 (0.999); UTP6 (0.999); UTP4 (0.999); BMS1 (0.999); BFR2 (0.999); RRP5 (0.999)
Homologues (species, bitscore): IMP4 (Homo sapiens, 291.2); Imp4 (Mus musculus, 294.7); imp4 (Danio rerio, 300.4); imp4 (Xenopus tropicalis, 236.1); CG11920 (Drosophila melanogaster, 263.1); ZK795.3 (Caenorhabditis elegans, 259.2); IMP4 (Arabidopsis thaliana, 266.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:479276-480148:+ | gene-YNL075W_AKU4011 | rna-NM_001182913.3_AKU4011 | cds-NP_014324.3_AKU4011 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:383304-384176:+ | gene-YNL075W_BG1 | rna-NM_001182913.3_BG1 | cds-NP_014324.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:490005-490877:+ | gene-YNL075W_Bruggeman | rna-NM_001182913.3_Bruggeman | cds-NP_014324.3_Bruggeman | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:533000-533872:+ | gene-YNL075W_CAT1 | rna-NM_001182913.3_CAT1 | cds-NP_014324.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:479944-480816:+ | gene-YNL075W_CBS1585 | rna-NM_001182913.3_CBS1585 | cds-NP_014324.3_CBS1585 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:548359-549231:+ | gene-YNL075W_CBS436 | rna-NM_001182913.3_CBS436 | cds-NP_014324.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:475038-475910:+ | gene-YNL075W_CBS6412 | rna-NM_001182913.3_CBS6412 | cds-NP_014324.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:476355-477227:+ | gene-YNL075W_CBS6413 | rna-NM_001182913.3_CBS6413 | cds-NP_014324.3_CBS6413 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:479465-480337:+ | gene-YNL075W_CENPK1137D | rna-NM_001182913.3_CENPK1137D | cds-NP_014324.3_CENPK1137D | 93.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:482098-482970:+ | gene-YNL075W_EthanolRed | rna-NM_001182913.3_EthanolRed | cds-NP_014324.3_EthanolRed | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:472622-473494:+ | gene-YNL075W_FaliES1 | rna-NM_001182913.3_FaliES1 | cds-NP_014324.3_FaliES1 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000317.1:100-972:- | gene-YNL075W_JAY291 | rna-NM_001182913.3_JAY291 | cds-NP_014324.3_JAY291 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:486168-487040:+ | gene-YNL075W_MUCL30387 | rna-NM_001182913.3_MUCL30387 | cds-NP_014324.3_MUCL30387 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:521566-522438:+ | gene-YNL075W_MUCL30388 | rna-NM_001182913.3_MUCL30388 | cds-NP_014324.3_MUCL30388 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:477347-478219:+ | gene-YNL075W_MUCL39482 | rna-NM_001182913.3_MUCL39482 | cds-NP_014324.3_MUCL39482 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:481276-482148:+ | gene-YNL075W_MUCL42920 | rna-NM_001182913.3_MUCL42920 | cds-NP_014324.3_MUCL42920 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:485576-486448:+ | gene-YNL075W_NCIM3186 | rna-NM_001182913.3_NCIM3186 | cds-NP_014324.3_NCIM3186 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:479397-480269:+ | gene-YNL075W_NCYC1407 | rna-NM_001182913.3_NCYC1407 | cds-NP_014324.3_NCYC1407 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:482633-483505:+ | gene-YNL075W_PE2H3 | rna-NM_001182913.3_PE2H3 | cds-NP_014324.3_PE2H3 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:477708-478580:+ | gene-YNL075W_PE2H4 | rna-NM_001182913.3_PE2H4 | cds-NP_014324.3_PE2H4 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:485607-486479:+ | gene-YNL075W_S288C | rna-NM_001182913.3_S288C | cds-NP_014324.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:70561-71433:+ | gene-YNL075W_SA1 | rna-NM_001182913.3_SA1 | cds-NP_014324.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:473498-474370:+ | gene-YNL075W_ThermosaccDry | rna-NM_001182913.3_ThermosaccDry | cds-NP_014324.3_ThermosaccDry | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:492616-493488:+ | gene-YNL075W_VR1 | rna-NM_001182913.3_VR1 | cds-NP_014324.3_VR1 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:382848-383720:+ | gene-YNL075W_ZTW1 | rna-NM_001182913.3_ZTW1 | cds-NP_014324.3_ZTW1 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:489056-489928:+ | gene-YNL075W_Sparadoxus | rna-NM_001182913.3_Sparadoxus | cds-NP_014324.3_Sparadoxus | 94.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |