Gene name: IMP3
Reference locus (S288C): YHR148W
Gene biotype: protein_coding
Description: U3 small nucleolar ribonucleoprotein protein IMP3; Component of the SSU processome; SSU processome is required for pre-18S rRNA processing, essential protein that interacts with Mpp10p and mediates interactions of Imp4p and Mpp10p with U3 snoRNA; Belongs to the universal ribosomal protein uS4 family
Top 10 interactors (score): NOC4 (0.999); UTP21 (0.999); RCL1 (0.999); NOP58 (0.999); UTP18 (0.999); IMP4 (0.999); NOP1 (0.999); UTP5 (0.999); PNO1 (0.999); YTM1 (0.999); UTP13 (0.999); NAN1 (0.999); UTP15 (0.999); MRT4 (0.999); DIP2 (0.999); RRP9 (0.999); ENP2 (0.999); PWP2 (0.999); UTP14 (0.999); UTP7 (0.999)
Homologues (species, bitscore): IMP3 (Homo sapiens, 203.4); Imp3 (Mus musculus, 206.1); imp3 (Danio rerio, 218.4); imp3 (Xenopus tropicalis, 84.3); CG4866 (Drosophila melanogaster, 205.7); C48B6.2 (Caenorhabditis elegans, 172.6); AT5G15750 (Arabidopsis thaliana, 202.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:380626-381177:+ | gene-YHR148W_AKU4011 | rna-NM_001179279.1_AKU4011 | cds-NP_012018.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:136571-137122:- | gene-YHR148W_BG1 | rna-NM_001179279.1_BG1 | cds-NP_012018.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:387869-388420:+ | gene-YHR148W_Bruggeman | rna-NM_001179279.1_Bruggeman | cds-NP_012018.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:383270-383821:+ | gene-YHR148W_CAT1 | rna-NM_001179279.1_CAT1 | cds-NP_012018.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:380082-380633:+ | gene-YHR148W_CBS1585 | rna-NM_001179279.1_CBS1585 | cds-NP_012018.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:377523-378074:+ | gene-YHR148W_CBS436 | rna-NM_001179279.1_CBS436 | cds-NP_012018.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:380522-381073:+ | gene-YHR148W_CBS6412 | rna-NM_001179279.1_CBS6412 | cds-NP_012018.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:380963-381514:+ | gene-YHR148W_CBS6413 | rna-NM_001179279.1_CBS6413 | cds-NP_012018.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:386707-387258:+ | gene-YHR148W_CENPK1137D | rna-NM_001179279.1_CENPK1137D | cds-NP_012018.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:439163-439714:+ | gene-YHR148W_EthanolRed | rna-NM_001179279.1_EthanolRed | cds-NP_012018.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:381606-382157:+ | gene-YHR148W_FaliES1 | rna-NM_001179279.1_FaliES1 | cds-NP_012018.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000017.1:57684-58235:- | gene-YHR148W_JAY291 | rna-NM_001179279.1_JAY291 | cds-NP_012018.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:388950-389501:+ | gene-YHR148W_MUCL30387 | rna-NM_001179279.1_MUCL30387 | cds-NP_012018.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:388390-388941:+ | gene-YHR148W_MUCL30388 | rna-NM_001179279.1_MUCL30388 | cds-NP_012018.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:379993-380544:+ | gene-YHR148W_MUCL39482 | rna-NM_001179279.1_MUCL39482 | cds-NP_012018.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:386542-387093:+ | gene-YHR148W_MUCL42920 | rna-NM_001179279.1_MUCL42920 | cds-NP_012018.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:393416-393967:+ | gene-YHR148W_NCIM3186 | rna-NM_001179279.1_NCIM3186 | cds-NP_012018.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:382451-383002:+ | gene-YHR148W_NCYC1407 | rna-NM_001179279.1_NCYC1407 | cds-NP_012018.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:381579-382130:+ | gene-YHR148W_PE2H3 | rna-NM_001179279.1_PE2H3 | cds-NP_012018.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:389006-389557:+ | gene-YHR148W_PE2H4 | rna-NM_001179279.1_PE2H4 | cds-NP_012018.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:393534-394085:+ | gene-YHR148W_S288C | rna-NM_001179279.1_S288C | cds-NP_012018.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000070.1:57742-58293:- | gene-YHR148W_SA1 | rna-NM_001179279.1_SA1 | cds-NP_012018.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:382689-383240:+ | gene-YHR148W_ThermosaccDry | rna-NM_001179279.1_ThermosaccDry | cds-NP_012018.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:390501-391052:+ | gene-YHR148W_VR1 | rna-NM_001179279.1_VR1 | cds-NP_012018.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:372932-373483:+ | gene-YHR148W_ZTW1 | rna-NM_001179279.1_ZTW1 | cds-NP_012018.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:379072-379623:+ | gene-YHR148W_Sparadoxus | rna-NM_001179279.1_Sparadoxus | cds-NP_012018.1_Sparadoxus | 94.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |