Gene name: IGO1
Reference locus (S288C): YNL157W
Gene biotype: protein_coding
Description: mRNA stability protein IGO1; Protein required for initiation of G0 program; prevents degradation of nutrient-regulated mRNAs via the 5'-3' mRNA decay pathway; phosphorylated by Rim15p; GFP protein localizes to the cytoplasm and nucleus; IGO1 has a paralog, IGO2, that arose from the whole genome duplication
Top 10 interactors (score): RIM15 (0.997); CDC55 (0.988); IGO2 (0.933); CDC28 (0.861); SWE1 (0.84); DHH1 (0.779); ZDS1 (0.77); GIS1 (0.767); PPH21 (0.756); TAP42 (0.738); MIH1 (0.736); MSN2 (0.651); ZDS2 (0.648); PBP4 (0.637); TOR2 (0.628); SCH9 (0.609); CCR4 (0.592); FCP1 (0.57); RTS1 (0.564); RTS3 (0.561)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:334064-334570:+ | gene-YNL157W_AKU4011 | rna-NM_001182995.1_AKU4011 | cds-NP_014242.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:238092-238598:+ | gene-YNL157W_BG1 | rna-NM_001182995.1_BG1 | cds-NP_014242.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:344130-344636:+ | gene-YNL157W_Bruggeman | rna-NM_001182995.1_Bruggeman | cds-NP_014242.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:387058-387564:+ | gene-YNL157W_CAT1 | rna-NM_001182995.1_CAT1 | cds-NP_014242.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:334715-335221:+ | gene-YNL157W_CBS1585 | rna-NM_001182995.1_CBS1585 | cds-NP_014242.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:403073-403579:+ | gene-YNL157W_CBS436 | rna-NM_001182995.1_CBS436 | cds-NP_014242.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:330121-330627:+ | gene-YNL157W_CBS6412 | rna-NM_001182995.1_CBS6412 | cds-NP_014242.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:331149-331655:+ | gene-YNL157W_CBS6413 | rna-NM_001182995.1_CBS6413 | cds-NP_014242.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:334166-334672:+ | gene-YNL157W_CENPK1137D | rna-NM_001182995.1_CENPK1137D | cds-NP_014242.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:331047-331553:+ | gene-YNL157W_EthanolRed | rna-NM_001182995.1_EthanolRed | cds-NP_014242.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:326960-327466:+ | gene-YNL157W_FaliES1 | rna-NM_001182995.1_FaliES1 | cds-NP_014242.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000439.1:16183-16689:- | gene-YNL157W_JAY291 | rna-NM_001182995.1_JAY291 | cds-NP_014242.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:339951-340457:+ | gene-YNL157W_MUCL30387 | rna-NM_001182995.1_MUCL30387 | cds-NP_014242.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:374504-375010:+ | gene-YNL157W_MUCL30388 | rna-NM_001182995.1_MUCL30388 | cds-NP_014242.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:331955-332461:+ | gene-YNL157W_MUCL39482 | rna-NM_001182995.1_MUCL39482 | cds-NP_014242.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:334358-334864:+ | gene-YNL157W_MUCL42920 | rna-NM_001182995.1_MUCL42920 | cds-NP_014242.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:340321-340827:+ | gene-YNL157W_NCIM3186 | rna-NM_001182995.1_NCIM3186 | cds-NP_014242.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:334049-334555:+ | gene-YNL157W_NCYC1407 | rna-NM_001182995.1_NCYC1407 | cds-NP_014242.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:331043-331549:+ | gene-YNL157W_PE2H3 | rna-NM_001182995.1_PE2H3 | cds-NP_014242.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:330431-330937:+ | gene-YNL157W_PE2H4 | rna-NM_001182995.1_PE2H4 | cds-NP_014242.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:340352-340858:+ | gene-YNL157W_S288C | rna-NM_001182995.1_S288C | cds-NP_014242.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000018.1:72693-73199:- | gene-YNL157W_SA1 | rna-NM_001182995.1_SA1 | cds-NP_014242.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:327817-328323:+ | gene-YNL157W_ThermosaccDry | rna-NM_001182995.1_ThermosaccDry | cds-NP_014242.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:346372-346878:+ | gene-YNL157W_VR1 | rna-NM_001182995.1_VR1 | cds-NP_014242.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:237639-238145:+ | gene-YNL157W_ZTW1 | rna-NM_001182995.1_ZTW1 | cds-NP_014242.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:338466-338972:+ | gene-YNL157W_Sparadoxus | rna-NM_001182995.1_Sparadoxus | cds-NP_014242.1_Sparadoxus | 89.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |