Gene name: IGD1
Reference locus (S288C): YFR017C
Gene biotype: protein_coding
Description: Cytoplasmic protein that inhibits Gdb1p glycogen debranching activity; required for normal intracellular accumulation of glycogen; phosphorylated in vivo; expression increases during wine fermentation; protein abundance increases in response to DNA replication stress; IGD1 has a paralog, YOL024W, that arose from the whole genome duplication
Top 10 interactors (score): GDB1 (0.979); GLC3 (0.971); YPL247C (0.97); TMA10 (0.965); RGI1 (0.954); AIM17 (0.95); SDS24 (0.948); DCS2 (0.94); SOL4 (0.938); GSY1 (0.933); USV1 (0.928); EGO4 (0.927); PGM2 (0.922); TFS1 (0.92); GLK1 (0.916); OM45 (0.913); GAD1 (0.902); TSL1 (0.891); STF2 (0.856); GSY2 (0.846)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:172529-173116:- | gene-YFR017C_AKU4011 | rna-NM_001179982.1_AKU4011 | cds-NP_116672.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000071.1:87574-88161:+ | gene-YFR017C_BG1 | rna-NM_001179982.1_BG1 | cds-NP_116672.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:174358-174945:- | gene-YFR017C_Bruggeman | rna-NM_001179982.1_Bruggeman | cds-NP_116672.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:177894-178481:- | gene-YFR017C_CAT1 | rna-NM_001179982.1_CAT1 | cds-NP_116672.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:174011-174598:- | gene-YFR017C_CBS1585 | rna-NM_001179982.1_CBS1585 | cds-NP_116672.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:147224-147811:- | gene-YFR017C_CBS436 | rna-NM_001179982.1_CBS436 | cds-NP_116672.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:173093-173680:- | gene-YFR017C_CBS6412 | rna-NM_001179982.1_CBS6412 | cds-NP_116672.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:175747-176334:- | gene-YFR017C_CBS6413 | rna-NM_001179982.1_CBS6413 | cds-NP_116672.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:178372-178959:- | gene-YFR017C_CENPK1137D | rna-NM_001179982.1_CENPK1137D | cds-NP_116672.1_CENPK1137D | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:171661-172248:- | gene-YFR017C_EthanolRed | rna-NM_001179982.1_EthanolRed | cds-NP_116672.1_EthanolRed | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:173309-173896:- | gene-YFR017C_FaliES1 | rna-NM_001179982.1_FaliES1 | cds-NP_116672.1_FaliES1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000452.1:20018-20605:- | gene-YFR017C_JAY291 | rna-NM_001179982.1_JAY291 | cds-NP_116672.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:175601-176188:- | gene-YFR017C_MUCL30387 | rna-NM_001179982.1_MUCL30387 | cds-NP_116672.1_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:171840-172427:- | gene-YFR017C_MUCL30388 | rna-NM_001179982.1_MUCL30388 | cds-NP_116672.1_MUCL30388 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:171937-172524:- | gene-YFR017C_MUCL39482 | rna-NM_001179982.1_MUCL39482 | cds-NP_116672.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:171237-171824:- | gene-YFR017C_MUCL42920 | rna-NM_001179982.1_MUCL42920 | cds-NP_116672.1_MUCL42920 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:182273-182860:- | gene-YFR017C_NCIM3186 | rna-NM_001179982.1_NCIM3186 | cds-NP_116672.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:172814-173401:- | gene-YFR017C_NCYC1407 | rna-NM_001179982.1_NCYC1407 | cds-NP_116672.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:192038-192625:- | gene-YFR017C_PE2H3 | rna-NM_001179982.1_PE2H3 | cds-NP_116672.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:191586-192173:- | gene-YFR017C_PE2H4 | rna-NM_001179982.1_PE2H4 | cds-NP_116672.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:182274-182861:- | gene-YFR017C_S288C | rna-NM_001179982.1_S288C | cds-NP_116672.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:141530-142117:+ | gene-YFR017C_SA1 | rna-NM_001179982.1_SA1 | cds-NP_116672.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:172467-173054:- | gene-YFR017C_ThermosaccDry | rna-NM_001179982.1_ThermosaccDry | cds-NP_116672.1_ThermosaccDry | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:187955-188542:- | gene-YFR017C_VR1 | rna-NM_001179982.1_VR1 | cds-NP_116672.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:102907-103494:- | gene-YFR017C_ZTW1 | rna-NM_001179982.1_ZTW1 | cds-NP_116672.1_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:196339-196926:- | gene-YFR017C_Sparadoxus | rna-NM_001179982.1_Sparadoxus | cds-NP_116672.1_Sparadoxus | 91.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |