Gene name: IFH1
Reference locus (S288C): YLR223C
Gene biotype: protein_coding
Description: Protein IFH1; Coactivator, regulates transcription of ribosomal protein (RP) genes; recruited to RP gene promoters during optimal growth conditions via Fhl1p; subunit of CURI, a complex that coordinates RP production and pre-rRNA processing; regulated by acetylation and phosphorylation at different growth states via TORC1 signaling; IFH1 has a paralog, CRF1, that arose from the whole genome duplication
Top 10 interactors (score): FHL1 (0.998); UTP22 (0.997); RRP7 (0.991); RAP1 (0.971); SFP1 (0.97); HMO1 (0.968); CKB2 (0.963); ABF1 (0.96); TBF1 (0.917); STB3 (0.901); RRN11 (0.863); KRI1 (0.861); UTP13 (0.858); TOD6 (0.824); CKB1 (0.82); SCH9 (0.792); YAK1 (0.786); NOP53 (0.786); DIP2 (0.781); DOT6 (0.779)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:536379-539636:- | gene-YLR223C_AKU4011 | rna-NM_001182110.1_AKU4011 | cds-NP_013324.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000177.1:93634-96891:- | gene-YLR223C_BG1 | rna-NM_001182110.1_BG1 | cds-NP_013324.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:576601-579858:- | gene-YLR223C_Bruggeman | rna-NM_001182110.1_Bruggeman | cds-NP_013324.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:576250-579507:- | gene-YLR223C_CAT1 | rna-NM_001182110.1_CAT1 | cds-NP_013324.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:571871-575128:- | gene-YLR223C_CBS1585 | rna-NM_001182110.1_CBS1585 | cds-NP_013324.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:562069-565326:- | gene-YLR223C_CBS436 | rna-NM_001182110.1_CBS436 | cds-NP_013324.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:540433-543690:- | gene-YLR223C_CBS6412 | rna-NM_001182110.1_CBS6412 | cds-NP_013324.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:572168-575425:- | gene-YLR223C_CBS6413 | rna-NM_001182110.1_CBS6413 | cds-NP_013324.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:566956-570213:- | gene-YLR223C_CENPK1137D | rna-NM_001182110.1_CENPK1137D | cds-NP_013324.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:535892-539149:- | gene-YLR223C_EthanolRed | rna-NM_001182110.1_EthanolRed | cds-NP_013324.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:564819-568076:- | gene-YLR223C_FaliES1 | rna-NM_001182110.1_FaliES1 | cds-NP_013324.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000004.1:91717-94992:- | gene-YLR223C_JAY291 | rna-NM_001182110.1_JAY291 | cds-NP_013324.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:577462-580719:- | gene-YLR223C_MUCL30387 | rna-NM_001182110.1_MUCL30387 | cds-NP_013324.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:581583-584840:- | gene-YLR223C_MUCL30388 | rna-NM_001182110.1_MUCL30388 | cds-NP_013324.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:572854-576111:- | gene-YLR223C_MUCL39482 | rna-NM_001182110.1_MUCL39482 | cds-NP_013324.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:573350-576607:- | gene-YLR223C_MUCL42920 | rna-NM_001182110.1_MUCL42920 | cds-NP_013324.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:582207-585464:- | gene-YLR223C_NCIM3186 | rna-NM_001182110.1_NCIM3186 | cds-NP_013324.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:565273-568530:- | gene-YLR223C_NCYC1407 | rna-NM_001182110.1_NCYC1407 | cds-NP_013324.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:569521-572796:- | gene-YLR223C_PE2H3 | rna-NM_001182110.1_PE2H3 | cds-NP_013324.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:569265-572540:- | gene-YLR223C_PE2H4 | rna-NM_001182110.1_PE2H4 | cds-NP_013324.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:582233-585490:- | gene-YLR223C_S288C | rna-NM_001182110.1_S288C | cds-NP_013324.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000042.1:91769-95026:- | gene-YLR223C_SA1 | rna-NM_001182110.1_SA1 | cds-NP_013324.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:567312-570569:- | gene-YLR223C_ThermosaccDry | rna-NM_001182110.1_ThermosaccDry | cds-NP_013324.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:578655-581912:- | gene-YLR223C_VR1 | rna-NM_001182110.1_VR1 | cds-NP_013324.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:91600-94857:- | gene-YLR223C_ZTW1 | rna-NM_001182110.1_ZTW1 | cds-NP_013324.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:553480-556722:- | gene-YLR223C_Sparadoxus | rna-NM_001182110.1_Sparadoxus | cds-NP_013324.1_Sparadoxus | 87.8 | 98.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |