Gene name: IDP3
Reference locus (S288C): YNL009W
Gene biotype: protein_coding
Description: Peroxisomal NADP-dependent isocitrate dehydrogenase; catalyzes oxidation of isocitrate to alpha-ketoglutarate with the formation of NADP(H+), required for growth on unsaturated fatty acids; IDP3 has a paralog, IDP2, that arose from the whole genome duplication
Top 10 interactors (score): IDH2 (0.988); IDH1 (0.986); IDP2 (0.982); KGD1 (0.969); ACO1 (0.968); AAT1 (0.967); CIT3 (0.874); GDH3 (0.872); AAT2 (0.872); GDH1 (0.867); GDH2 (0.867); GLT1 (0.856); ALT2 (0.834); ALT1 (0.834); ADE13 (0.827); MDH2 (0.825); ARG4 (0.816); UGA2 (0.812); NIT3 (0.807); IDP1 (0.806)
Homologues (species, bitscore): IDH2 (Homo sapiens, 531.9); Idh2 (Mus musculus, 534.6); idh1 (Danio rerio, 498.0); idh2 (Xenopus tropicalis, 526.6); Idh (Drosophila melanogaster, 495.7); idh-2 (Caenorhabditis elegans, 527.7); AT5G14590 (Arabidopsis thaliana, 538.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:597827-599089:+ | gene-YNL009W_AKU4011 | rna-NM_001182848.3_AKU4011 | cds-NP_014389.3_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:500274-501536:+ | gene-YNL009W_BG1 | rna-NM_001182848.3_BG1 | cds-NP_014389.3_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:614705-615967:+ | gene-YNL009W_Bruggeman | rna-NM_001182848.3_Bruggeman | cds-NP_014389.3_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:650067-651329:+ | gene-YNL009W_CAT1 | rna-NM_001182848.3_CAT1 | cds-NP_014389.3_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:603524-604786:+ | gene-YNL009W_CBS1585 | rna-NM_001182848.3_CBS1585 | cds-NP_014389.3_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:665577-666839:+ | gene-YNL009W_CBS436 | rna-NM_001182848.3_CBS436 | cds-NP_014389.3_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:593332-594594:+ | gene-YNL009W_CBS6412 | rna-NM_001182848.3_CBS6412 | cds-NP_014389.3_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:594496-595758:+ | gene-YNL009W_CBS6413 | rna-NM_001182848.3_CBS6413 | cds-NP_014389.3_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:608471-609733:+ | gene-YNL009W_CENPK1137D | rna-NM_001182848.3_CENPK1137D | cds-NP_014389.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:599894-601156:+ | gene-YNL009W_EthanolRed | rna-NM_001182848.3_EthanolRed | cds-NP_014389.3_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:590663-591925:+ | gene-YNL009W_FaliES1 | rna-NM_001182848.3_FaliES1 | cds-NP_014389.3_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000008.1:16037-17299:- | gene-YNL009W_JAY291 | rna-NM_001182848.3_JAY291 | cds-NP_014389.3_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:612794-614056:+ | gene-YNL009W_MUCL30387 | rna-NM_001182848.3_MUCL30387 | cds-NP_014389.3_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:594848-595989:- | gene-YNL009W_MUCL30388 | rna-NM_001182848.3_MUCL30388 | cds-NP_014389.3_MUCL30388 | 85.1 | 89.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:595033-596295:+ | gene-YNL009W_MUCL39482 | rna-NM_001182848.3_MUCL39482 | cds-NP_014389.3_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:598888-600150:+ | gene-YNL009W_MUCL42920 | rna-NM_001182848.3_MUCL42920 | cds-NP_014389.3_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:614790-616052:+ | gene-YNL009W_NCIM3186 | rna-NM_001182848.3_NCIM3186 | cds-NP_014389.3_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:597286-598548:+ | gene-YNL009W_NCYC1407 | rna-NM_001182848.3_NCYC1407 | cds-NP_014389.3_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:599266-600528:+ | gene-YNL009W_PE2H3 | rna-NM_001182848.3_PE2H3 | cds-NP_014389.3_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:600584-601846:+ | gene-YNL009W_PE2H4 | rna-NM_001182848.3_PE2H4 | cds-NP_014389.3_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:614821-616083:+ | gene-YNL009W_S288C | rna-NM_001182848.3_S288C | cds-NP_014389.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000068.1:12491-13753:+ | gene-YNL009W_SA1 | rna-NM_001182848.3_SA1 | cds-NP_014389.3_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:591003-592265:+ | gene-YNL009W_ThermosaccDry | rna-NM_001182848.3_ThermosaccDry | cds-NP_014389.3_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:633611-634873:+ | gene-YNL009W_VR1 | rna-NM_001182848.3_VR1 | cds-NP_014389.3_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:499881-501143:+ | gene-YNL009W_ZTW1 | rna-NM_001182848.3_ZTW1 | cds-NP_014389.3_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:606051-607313:+ | gene-YNL009W_Sparadoxus | rna-NM_001182848.3_Sparadoxus | cds-NP_014389.3_Sparadoxus | 91.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |