Gene name: IDH1
Reference locus (S288C): YNL037C
Gene biotype: protein_coding
Description: Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase; complex catalyzes the oxidation of isocitrate to alpha-ketoglutarate in the TCA cycle; Belongs to the isocitrate and isopropylmalate dehydrogenases family
Top 10 interactors (score): ACO1 (0.999); CIT1 (0.999); LSC1 (0.999); IDH2 (0.999); IDP1 (0.998); KGD1 (0.998); ATP2 (0.996); ACO2 (0.995); IDP2 (0.992); LPD1 (0.99); KGD2 (0.988); IDP3 (0.986); CIT2 (0.981); MAS1 (0.98); MDH1 (0.979); SEC4 (0.978); SDH2 (0.976); LYS12 (0.975); ATP1 (0.974); CYT1 (0.973)
Homologues (species, bitscore): IDH3G (Homo sapiens, 347.1); Idh3g (Mus musculus, 347.1); zgc:113076 (Danio rerio, 347.8); idh3g (Xenopus tropicalis, 336.7); CG6439 (Drosophila melanogaster, 337.8); idhg-1 (Caenorhabditis elegans, 344.7); IDH-V (Arabidopsis thaliana, 320.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:545379-546461:- | gene-YNL037C_AKU4011 | rna-NM_001182876.1_AKU4011 | cds-NP_014361.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:449328-450410:- | gene-YNL037C_BG1 | rna-NM_001182876.1_BG1 | cds-NP_014361.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:563531-564613:- | gene-YNL037C_Bruggeman | rna-NM_001182876.1_Bruggeman | cds-NP_014361.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:599060-600142:- | gene-YNL037C_CAT1 | rna-NM_001182876.1_CAT1 | cds-NP_014361.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:546049-547131:- | gene-YNL037C_CBS1585 | rna-NM_001182876.1_CBS1585 | cds-NP_014361.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:614288-615370:- | gene-YNL037C_CBS436 | rna-NM_001182876.1_CBS436 | cds-NP_014361.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:541142-542224:- | gene-YNL037C_CBS6412 | rna-NM_001182876.1_CBS6412 | cds-NP_014361.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:542460-543542:- | gene-YNL037C_CBS6413 | rna-NM_001182876.1_CBS6413 | cds-NP_014361.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:551506-552588:- | gene-YNL037C_CENPK1137D | rna-NM_001182876.1_CENPK1137D | cds-NP_014361.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:548192-549274:- | gene-YNL037C_EthanolRed | rna-NM_001182876.1_EthanolRed | cds-NP_014361.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:538975-540057:- | gene-YNL037C_FaliES1 | rna-NM_001182876.1_FaliES1 | cds-NP_014361.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000040.1:53760-54842:- | gene-YNL037C_JAY291 | rna-NM_001182876.1_JAY291 | cds-NP_014361.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:559745-560827:- | gene-YNL037C_MUCL30387 | rna-NM_001182876.1_MUCL30387 | cds-NP_014361.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:588504-589586:- | gene-YNL037C_MUCL30388 | rna-NM_001182876.1_MUCL30388 | cds-NP_014361.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:543466-544548:- | gene-YNL037C_MUCL39482 | rna-NM_001182876.1_MUCL39482 | cds-NP_014361.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:547531-548613:- | gene-YNL037C_MUCL42920 | rna-NM_001182876.1_MUCL42920 | cds-NP_014361.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:557889-558971:- | gene-YNL037C_NCIM3186 | rna-NM_001182876.1_NCIM3186 | cds-NP_014361.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:545517-546599:- | gene-YNL037C_NCYC1407 | rna-NM_001182876.1_NCYC1407 | cds-NP_014361.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:548677-549759:- | gene-YNL037C_PE2H3 | rna-NM_001182876.1_PE2H3 | cds-NP_014361.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:543753-544835:- | gene-YNL037C_PE2H4 | rna-NM_001182876.1_PE2H4 | cds-NP_014361.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:557920-559002:- | gene-YNL037C_S288C | rna-NM_001182876.1_S288C | cds-NP_014361.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:136602-137684:- | gene-YNL037C_SA1 | rna-NM_001182876.1_SA1 | cds-NP_014361.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:539601-540683:- | gene-YNL037C_ThermosaccDry | rna-NM_001182876.1_ThermosaccDry | cds-NP_014361.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:558638-559720:- | gene-YNL037C_VR1 | rna-NM_001182876.1_VR1 | cds-NP_014361.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:448921-450003:- | gene-YNL037C_ZTW1 | rna-NM_001182876.1_ZTW1 | cds-NP_014361.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:554568-555650:- | gene-YNL037C_Sparadoxus | rna-NM_001182876.1_Sparadoxus | cds-NP_014361.1_Sparadoxus | 92.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |