HVG1 (YER039C)


Gene profile

Gene name: HVG1
Reference locus (S288C): YER039C
Gene biotype: protein_coding

Description: Probable GDP-mannose transporter 2; Protein of unknown function; HVG1 has a paralog, VRG4, that arose from the whole genome duplication

Top 10 interactors (score): YER039C-A (0.923); HUT1 (0.904); YMD8 (0.878); YEA4 (0.862); THI74 (0.77); YOL162W (0.753); YOL163W (0.753); DPM1 (0.681); ASF2 (0.65); PAU11 (0.615); DDI3 (0.613); SCS7 (0.611); YIL165C (0.611); LPL1 (0.577); EBS1 (0.571); YHR078W (0.57); COS12 (0.567); GUP2 (0.563); COS10 (0.56); PAU18 (0.558)

Homologues (species, bitscore): GONST1 (Arabidopsis thaliana, 107.8)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005299.1:222515-223264:- gene-YER039C_AKU4011 rna-NM_001178930.1_AKU4011 cds-NP_010956.1_AKU4011 99.3 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000011.1:202452-203201:+ gene-YER039C_BG1 rna-NM_001178930.1_BG1 cds-NP_010956.1_BG1 99.7 100.0 Verified 1 1 1 True True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005507.1:231368-232117:- gene-YER039C_Bruggeman rna-NM_001178930.1_Bruggeman cds-NP_010956.1_Bruggeman 99.6 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005523.1:225501-226250:- gene-YER039C_CAT1 rna-NM_001178930.1_CAT1 cds-NP_010956.1_CAT1 99.6 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005363.1:222424-223173:- gene-YER039C_CBS1585 rna-NM_001178930.1_CBS1585 cds-NP_010956.1_CBS1585 99.3 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005347.1:224369-225118:- gene-YER039C_CBS436 rna-NM_001178930.1_CBS436 cds-NP_010956.1_CBS436 99.6 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005331.1:222285-223034:- gene-YER039C_CBS6412 rna-NM_001178930.1_CBS6412 cds-NP_010956.1_CBS6412 99.3 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005315.1:227895-228644:- gene-YER039C_CBS6413 rna-NM_001178930.1_CBS6413 cds-NP_010956.1_CBS6413 99.3 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001526.1:226651-227400:- gene-YER039C_CENPK1137D rna-NM_001178930.1_CENPK1137D cds-NP_010956.1_CENPK1137D 99.3 100.0 Unannotated 1 1 0 False False False False True
EthanolRed GCA_001738615.1 Bioethanol Asia CM005475.1:223119-223868:- gene-YER039C_EthanolRed rna-NM_001178930.1_EthanolRed cds-NP_010956.1_EthanolRed 99.0 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005539.1:223382-224131:- gene-YER039C_FaliES1 rna-NM_001178930.1_FaliES1 cds-NP_010956.1_FaliES1 99.2 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000192.1:21146-21895:- gene-YER039C_JAY291 rna-NM_001178930.1_JAY291 cds-NP_010956.1_JAY291 99.7 100.0 Verified 1 1 1 True True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005411.1:226815-227564:- gene-YER039C_MUCL30387 rna-NM_001178930.1_MUCL30387 cds-NP_010956.1_MUCL30387 99.6 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005443.1:223033-223782:- gene-YER039C_MUCL30388 rna-NM_001178930.1_MUCL30388 cds-NP_010956.1_MUCL30388 99.6 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005283.1:221466-222215:- gene-YER039C_MUCL39482 rna-NM_001178930.1_MUCL39482 cds-NP_010956.1_MUCL39482 99.3 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005427.1:228542-229291:- gene-YER039C_MUCL42920 rna-NM_001178930.1_MUCL42920 cds-NP_010956.1_MUCL42920 99.7 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011814.1:228455-229204:- gene-YER039C_NCIM3186 rna-NM_001178930.1_NCIM3186 cds-NP_010956.1_NCIM3186 99.0 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005267.1:226528-227277:- gene-YER039C_NCYC1407 rna-NM_001178930.1_NCYC1407 cds-NP_010956.1_NCYC1407 99.3 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994144.1:237157-237906:- gene-YER039C_PE2H3 rna-NM_001178930.1_PE2H3 cds-NP_010956.1_PE2H3 99.7 100.0 Verified 1 1 1 True True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999876.1:227098-227847:- gene-YER039C_PE2H4 rna-NM_001178930.1_PE2H4 cds-NP_010956.1_PE2H4 99.7 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001137.3:228456-229205:- gene-YER039C_S288C rna-NM_001178930.1_S288C cds-NP_010956.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000020.1:14481-15230:+ gene-YER039C_SA1 rna-NM_001178930.1_SA1 cds-NP_010956.1_SA1 99.6 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005491.1:224154-224903:- gene-YER039C_ThermosaccDry rna-NM_001178930.1_ThermosaccDry cds-NP_010956.1_ThermosaccDry 99.3 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005459.1:223253-224002:- gene-YER039C_VR1 rna-NM_001178930.1_VR1 cds-NP_010956.1_VR1 99.8 100.0 Verified 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000009.1:221367-222116:- gene-YER039C_ZTW1 rna-NM_001178930.1_ZTW1 cds-NP_010956.1_ZTW1 99.3 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047491.1:225181-225929:- gene-YER039C_Sparadoxus rna-NM_001178930.1_Sparadoxus cds-NP_010956.1_Sparadoxus 88.9 99.8 Mismatch 1 1 0 False False False True False

Additional files