Gene name: HUL4
Reference locus (S288C): YJR036C
Gene biotype: protein_coding
Description: Protein with similarity to hect domain E3 ubiquitin-protein ligases; not essential for viability; found in association with Trf4 in TRAMP complex; Belongs to the HUL4 family
Top 10 interactors (score): RPN10 (0.983); RKR1 (0.974); RAD6 (0.95); PKP2 (0.831); PKP1 (0.823); CDC45 (0.819); YBR062C (0.772); RAD23 (0.764); CUE2 (0.745); MAG2 (0.721); TAD1 (0.712); UBC1 (0.698); UBC4 (0.692); EST2 (0.675); YKR073C (0.672); YMR075C-A (0.671); DSK2 (0.659); ASR1 (0.658); CBF5 (0.652); SBA1 (0.647)
Homologues (species, bitscore): HECTD2 (Homo sapiens, 271.2); Hectd2 (Mus musculus, 278.9); hectd2 (Danio rerio, 282.0); ube3a (Xenopus tropicalis, 266.2); Ube3a (Drosophila melanogaster, 250.4); herc-1 (Caenorhabditis elegans, 173.7); UPL1 (Arabidopsis thaliana, 186.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:472411-475089:- | gene-YJR036C_AKU4011 | rna-NM_001181694.3_AKU4011 | cds-NP_012570.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:137864-140542:+ | gene-YJR036C_BG1 | rna-NM_001181694.3_BG1 | cds-NP_012570.3_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:486449-489127:- | gene-YJR036C_Bruggeman | rna-NM_001181694.3_Bruggeman | cds-NP_012570.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:490379-493057:- | gene-YJR036C_CAT1 | rna-NM_001181694.3_CAT1 | cds-NP_012570.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:483990-486668:- | gene-YJR036C_CBS1585 | rna-NM_001181694.3_CBS1585 | cds-NP_012570.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:502940-505618:- | gene-YJR036C_CBS436 | rna-NM_001181694.3_CBS436 | cds-NP_012570.3_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:472196-474874:- | gene-YJR036C_CBS6412 | rna-NM_001181694.3_CBS6412 | cds-NP_012570.3_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:474441-477119:- | gene-YJR036C_CBS6413 | rna-NM_001181694.3_CBS6413 | cds-NP_012570.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:483081-485759:- | gene-YJR036C_CENPK1137D | rna-NM_001181694.3_CENPK1137D | cds-NP_012570.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:477341-480019:- | gene-YJR036C_EthanolRed | rna-NM_001181694.3_EthanolRed | cds-NP_012570.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:488558-491236:- | gene-YJR036C_FaliES1 | rna-NM_001181694.3_FaliES1 | cds-NP_012570.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000250.1:3408-6086:- | gene-YJR036C_JAY291 | rna-NM_001181694.3_JAY291 | cds-NP_012570.3_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:486759-489437:- | gene-YJR036C_MUCL30387 | rna-NM_001181694.3_MUCL30387 | cds-NP_012570.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:483306-485984:- | gene-YJR036C_MUCL30388 | rna-NM_001181694.3_MUCL30388 | cds-NP_012570.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:477450-480128:- | gene-YJR036C_MUCL39482 | rna-NM_001181694.3_MUCL39482 | cds-NP_012570.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:482713-485391:- | gene-YJR036C_MUCL42920 | rna-NM_001181694.3_MUCL42920 | cds-NP_012570.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:500692-503370:- | gene-YJR036C_NCIM3186 | rna-NM_001181694.3_NCIM3186 | cds-NP_012570.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:475293-477971:- | gene-YJR036C_NCYC1407 | rna-NM_001181694.3_NCYC1407 | cds-NP_012570.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:493629-496307:- | gene-YJR036C_PE2H3 | rna-NM_001181694.3_PE2H3 | cds-NP_012570.3_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:487325-490003:- | gene-YJR036C_PE2H4 | rna-NM_001181694.3_PE2H4 | cds-NP_012570.3_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:500713-503391:- | gene-YJR036C_S288C | rna-NM_001181694.3_S288C | cds-NP_012570.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:285220-287898:- | gene-YJR036C_SA1 | rna-NM_001181694.3_SA1 | cds-NP_012570.3_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:482246-484924:- | gene-YJR036C_ThermosaccDry | rna-NM_001181694.3_ThermosaccDry | cds-NP_012570.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:484479-487157:- | gene-YJR036C_VR1 | rna-NM_001181694.3_VR1 | cds-NP_012570.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:462132-464810:- | gene-YJR036C_ZTW1 | rna-NM_001181694.3_ZTW1 | cds-NP_012570.3_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:486866-489541:- | gene-YJR036C_Sparadoxus | rna-NM_001181694.3_Sparadoxus | cds-NP_012570.3_Sparadoxus | 88.7 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |