HUB1 (YNR032C-A)


Gene profile

Gene name: HUB1
Reference locus (S288C): YNR032C-A
Gene biotype: protein_coding

Description: Ubiquitin-like protein modifier; promotes alternative splicing of SRC1 pre-mRNA; binds non-covalently to the HIND domain of Snu66, may function in modification of Sph1p and Hbt1p, functionally complemented by the human or S. pombe ortholog; mechanism of Hub1p adduct formation not yet clear

Top 10 interactors (score): ECM2 (0.999); IST3 (0.999); SNU66 (0.999); BRR2 (0.999); BUD13 (0.999); URN1 (0.999); PML1 (0.999); PRP8 (0.99); SMD3 (0.965); SMX2 (0.964); CDC40 (0.962); LSM5 (0.96); ISY1 (0.913); NOP10 (0.901); RPB11 (0.896); MDM35 (0.888); SDH5 (0.886); GPN3 (0.883); PRP6 (0.881); GIM5 (0.881)

Homologues (species, bitscore): UBL5 (Homo sapiens, 102.8); Ubl5 (Mus musculus, 102.8); ubl5 (Xenopus tropicalis, 96.3); ubl (Drosophila melanogaster, 94.0); ubl-5 (Caenorhabditis elegans, 95.5); AT3G45180 (Arabidopsis thaliana, 99.4)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005308.1:670886-671107:- gene-YNR032C-A_AKU4011 rna-NM_001184344.1_AKU4011 cds-NP_014430.1_AKU4011 99.5 100.0 Mismatch 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000155.1:578753-578974:- gene-YNR032C-A_BG1 rna-NM_001184344.1_BG1 cds-NP_014430.1_BG1 100.0 100.0 Verified 1 1 1 True True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005516.1:688340-688561:- gene-YNR032C-A_Bruggeman rna-NM_001184344.1_Bruggeman cds-NP_014430.1_Bruggeman 100.0 100.0 Verified 1 1 1 True True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005532.1:722598-722819:- gene-YNR032C-A_CAT1 rna-NM_001184344.1_CAT1 cds-NP_014430.1_CAT1 100.0 100.0 Verified 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005372.1:676641-676862:- gene-YNR032C-A_CBS1585 rna-NM_001184344.1_CBS1585 cds-NP_014430.1_CBS1585 98.6 100.0 Mismatch 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005356.1:738310-738531:- gene-YNR032C-A_CBS436 rna-NM_001184344.1_CBS436 cds-NP_014430.1_CBS436 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005340.1:665829-666050:- gene-YNR032C-A_CBS6412 rna-NM_001184344.1_CBS6412 cds-NP_014430.1_CBS6412 98.6 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005324.1:667534-667755:- gene-YNR032C-A_CBS6413 rna-NM_001184344.1_CBS6413 cds-NP_014430.1_CBS6413 98.6 100.0 Mismatch 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001535.1:680992-681213:- gene-YNR032C-A_CENPK1137D rna-NM_001184344.1_CENPK1137D cds-NP_014430.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005484.1:672579-672800:- gene-YNR032C-A_EthanolRed rna-NM_001184344.1_EthanolRed cds-NP_014430.1_EthanolRed 99.5 100.0 Mismatch 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005548.1:663782-664003:- gene-YNR032C-A_FaliES1 rna-NM_001184344.1_FaliES1 cds-NP_014430.1_FaliES1 99.5 100.0 Mismatch 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000037.1:38777-38998:+ gene-YNR032C-A_JAY291 rna-NM_001184344.1_JAY291 cds-NP_014430.1_JAY291 100.0 100.0 Verified 1 1 1 True True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005420.1:686097-686318:- gene-YNR032C-A_MUCL30387 rna-NM_001184344.1_MUCL30387 cds-NP_014430.1_MUCL30387 100.0 100.0 Verified 1 1 1 True True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005452.1:726920-727141:- gene-YNR032C-A_MUCL30388 rna-NM_001184344.1_MUCL30388 cds-NP_014430.1_MUCL30388 100.0 100.0 Verified 1 1 1 True True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005292.1:668141-668362:- gene-YNR032C-A_MUCL39482 rna-NM_001184344.1_MUCL39482 cds-NP_014430.1_MUCL39482 98.6 100.0 Mismatch 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005436.1:672315-672536:- gene-YNR032C-A_MUCL42920 rna-NM_001184344.1_MUCL42920 cds-NP_014430.1_MUCL42920 100.0 100.0 Verified 1 1 1 True True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011823.1:687212-687433:- gene-YNR032C-A_NCIM3186 rna-NM_001184344.1_NCIM3186 cds-NP_014430.1_NCIM3186 99.5 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005276.1:670649-670870:- gene-YNR032C-A_NCYC1407 rna-NM_001184344.1_NCYC1407 cds-NP_014430.1_NCYC1407 98.6 100.0 Mismatch 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994153.1:671743-671964:- gene-YNR032C-A_PE2H3 rna-NM_001184344.1_PE2H3 cds-NP_014430.1_PE2H3 100.0 100.0 Verified 1 1 1 True True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999885.1:673061-673282:- gene-YNR032C-A_PE2H4 rna-NM_001184344.1_PE2H4 cds-NP_014430.1_PE2H4 100.0 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001146.8:687243-687464:- gene-YNR032C-A_S288C rna-NM_001184344.1_S288C cds-NP_014430.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000074.1:38927-39148:+ gene-YNR032C-A_SA1 rna-NM_001184344.1_SA1 cds-NP_014430.1_SA1 100.0 100.0 Verified 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005500.1:664119-664340:- gene-YNR032C-A_ThermosaccDry rna-NM_001184344.1_ThermosaccDry cds-NP_014430.1_ThermosaccDry 99.5 100.0 Mismatch 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005468.1:706119-706340:- gene-YNR032C-A_VR1 rna-NM_001184344.1_VR1 cds-NP_014430.1_VR1 100.0 100.0 Verified 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000030.1:573527-573748:- gene-YNR032C-A_ZTW1 rna-NM_001184344.1_ZTW1 cds-NP_014430.1_ZTW1 100.0 100.0 Verified 1 1 1 True True False False False

Additional files