Gene name: HUB1
Reference locus (S288C): YNR032C-A
Gene biotype: protein_coding
Description: Ubiquitin-like protein modifier; promotes alternative splicing of SRC1 pre-mRNA; binds non-covalently to the HIND domain of Snu66, may function in modification of Sph1p and Hbt1p, functionally complemented by the human or S. pombe ortholog; mechanism of Hub1p adduct formation not yet clear
Top 10 interactors (score): ECM2 (0.999); IST3 (0.999); SNU66 (0.999); BRR2 (0.999); BUD13 (0.999); URN1 (0.999); PML1 (0.999); PRP8 (0.99); SMD3 (0.965); SMX2 (0.964); CDC40 (0.962); LSM5 (0.96); ISY1 (0.913); NOP10 (0.901); RPB11 (0.896); MDM35 (0.888); SDH5 (0.886); GPN3 (0.883); PRP6 (0.881); GIM5 (0.881)
Homologues (species, bitscore): UBL5 (Homo sapiens, 102.8); Ubl5 (Mus musculus, 102.8); ubl5 (Xenopus tropicalis, 96.3); ubl (Drosophila melanogaster, 94.0); ubl-5 (Caenorhabditis elegans, 95.5); AT3G45180 (Arabidopsis thaliana, 99.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:670886-671107:- | gene-YNR032C-A_AKU4011 | rna-NM_001184344.1_AKU4011 | cds-NP_014430.1_AKU4011 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:578753-578974:- | gene-YNR032C-A_BG1 | rna-NM_001184344.1_BG1 | cds-NP_014430.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:688340-688561:- | gene-YNR032C-A_Bruggeman | rna-NM_001184344.1_Bruggeman | cds-NP_014430.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:722598-722819:- | gene-YNR032C-A_CAT1 | rna-NM_001184344.1_CAT1 | cds-NP_014430.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:676641-676862:- | gene-YNR032C-A_CBS1585 | rna-NM_001184344.1_CBS1585 | cds-NP_014430.1_CBS1585 | 98.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:738310-738531:- | gene-YNR032C-A_CBS436 | rna-NM_001184344.1_CBS436 | cds-NP_014430.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:665829-666050:- | gene-YNR032C-A_CBS6412 | rna-NM_001184344.1_CBS6412 | cds-NP_014430.1_CBS6412 | 98.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:667534-667755:- | gene-YNR032C-A_CBS6413 | rna-NM_001184344.1_CBS6413 | cds-NP_014430.1_CBS6413 | 98.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:680992-681213:- | gene-YNR032C-A_CENPK1137D | rna-NM_001184344.1_CENPK1137D | cds-NP_014430.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:672579-672800:- | gene-YNR032C-A_EthanolRed | rna-NM_001184344.1_EthanolRed | cds-NP_014430.1_EthanolRed | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:663782-664003:- | gene-YNR032C-A_FaliES1 | rna-NM_001184344.1_FaliES1 | cds-NP_014430.1_FaliES1 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000037.1:38777-38998:+ | gene-YNR032C-A_JAY291 | rna-NM_001184344.1_JAY291 | cds-NP_014430.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:686097-686318:- | gene-YNR032C-A_MUCL30387 | rna-NM_001184344.1_MUCL30387 | cds-NP_014430.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:726920-727141:- | gene-YNR032C-A_MUCL30388 | rna-NM_001184344.1_MUCL30388 | cds-NP_014430.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:668141-668362:- | gene-YNR032C-A_MUCL39482 | rna-NM_001184344.1_MUCL39482 | cds-NP_014430.1_MUCL39482 | 98.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:672315-672536:- | gene-YNR032C-A_MUCL42920 | rna-NM_001184344.1_MUCL42920 | cds-NP_014430.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:687212-687433:- | gene-YNR032C-A_NCIM3186 | rna-NM_001184344.1_NCIM3186 | cds-NP_014430.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:670649-670870:- | gene-YNR032C-A_NCYC1407 | rna-NM_001184344.1_NCYC1407 | cds-NP_014430.1_NCYC1407 | 98.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:671743-671964:- | gene-YNR032C-A_PE2H3 | rna-NM_001184344.1_PE2H3 | cds-NP_014430.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:673061-673282:- | gene-YNR032C-A_PE2H4 | rna-NM_001184344.1_PE2H4 | cds-NP_014430.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:687243-687464:- | gene-YNR032C-A_S288C | rna-NM_001184344.1_S288C | cds-NP_014430.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000074.1:38927-39148:+ | gene-YNR032C-A_SA1 | rna-NM_001184344.1_SA1 | cds-NP_014430.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:664119-664340:- | gene-YNR032C-A_ThermosaccDry | rna-NM_001184344.1_ThermosaccDry | cds-NP_014430.1_ThermosaccDry | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:706119-706340:- | gene-YNR032C-A_VR1 | rna-NM_001184344.1_VR1 | cds-NP_014430.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:573527-573748:- | gene-YNR032C-A_ZTW1 | rna-NM_001184344.1_ZTW1 | cds-NP_014430.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |