Gene name: HTZ1
Reference locus (S288C): YOL012C
Gene biotype: protein_coding
Description: Histone variant H2AZ; exchanged for histone H2A in nucleosomes by the SWR1 complex; involved in transcriptional regulation through prevention of the spread of silent heterochromatin; Htz1p-containing nucleosomes facilitate RNA Pol II passage by affecting correct assembly and modification status of RNA Pol II elongation complexes and by favoring efficient nucleosome remodeling
Top 10 interactors (score): HHF1 (0.999); NAP1 (0.999); RVB1 (0.999); HHT1 (0.999); HTB1 (0.999); SWR1 (0.999); VPS72 (0.999); HHT2 (0.999); HTB2 (0.999); HTA1 (0.998); YAF9 (0.997); HTA2 (0.996); VPS71 (0.996); CHZ1 (0.995); HHO1 (0.994); ASF1 (0.994); SPT16 (0.993); ESA1 (0.992); SET2 (0.992); HHF2 (0.992)
Homologues (species, bitscore): H2AFZ (Homo sapiens, 163.7); H2afz (Mus musculus, 163.7); h2afvb (Danio rerio, 164.9); h2afv (Xenopus tropicalis, 163.7); His2Av (Drosophila melanogaster, 165.2); htz-1 (Caenorhabditis elegans, 166.8); HTA8 (Arabidopsis thaliana, 160.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:287954-288358:- | gene-YOL012C_AKU4011 | rna-NM_001183266.1_AKU4011 | cds-NP_014631.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:103545-103949:- | gene-YOL012C_BG1 | rna-NM_001183266.1_BG1 | cds-NP_014631.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:290772-291176:- | gene-YOL012C_Bruggeman | rna-NM_001183266.1_Bruggeman | cds-NP_014631.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:288911-289315:- | gene-YOL012C_CAT1 | rna-NM_001183266.1_CAT1 | cds-NP_014631.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:282631-283035:- | gene-YOL012C_CBS1585 | rna-NM_001183266.1_CBS1585 | cds-NP_014631.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:286873-287277:- | gene-YOL012C_CBS436 | rna-NM_001183266.1_CBS436 | cds-NP_014631.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:281981-282385:- | gene-YOL012C_CBS6412 | rna-NM_001183266.1_CBS6412 | cds-NP_014631.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:289514-289918:- | gene-YOL012C_CBS6413 | rna-NM_001183266.1_CBS6413 | cds-NP_014631.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:303334-303738:- | gene-YOL012C_CENPK1137D | rna-NM_001183266.1_CENPK1137D | cds-NP_014631.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:284766-285170:- | gene-YOL012C_EthanolRed | rna-NM_001183266.1_EthanolRed | cds-NP_014631.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:288093-288497:- | gene-YOL012C_FaliES1 | rna-NM_001183266.1_FaliES1 | cds-NP_014631.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000015.1:40789-41193:+ | gene-YOL012C_JAY291 | rna-NM_001183266.1_JAY291 | cds-NP_014631.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:294970-295374:- | gene-YOL012C_MUCL30387 | rna-NM_001183266.1_MUCL30387 | cds-NP_014631.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:298416-298820:- | gene-YOL012C_MUCL30388 | rna-NM_001183266.1_MUCL30388 | cds-NP_014631.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:290114-290518:- | gene-YOL012C_MUCL39482 | rna-NM_001183266.1_MUCL39482 | cds-NP_014631.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:305029-305433:- | gene-YOL012C_MUCL42920 | rna-NM_001183266.1_MUCL42920 | cds-NP_014631.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:303468-303872:- | gene-YOL012C_NCIM3186 | rna-NM_001183266.1_NCIM3186 | cds-NP_014631.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:296847-297251:- | gene-YOL012C_NCYC1407 | rna-NM_001183266.1_NCYC1407 | cds-NP_014631.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:291462-291866:- | gene-YOL012C_PE2H3 | rna-NM_001183266.1_PE2H3 | cds-NP_014631.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:301861-302265:- | gene-YOL012C_PE2H4 | rna-NM_001183266.1_PE2H4 | cds-NP_014631.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:303579-303983:- | gene-YOL012C_S288C | rna-NM_001183266.1_S288C | cds-NP_014631.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:271561-271965:- | gene-YOL012C_SA1 | rna-NM_001183266.1_SA1 | cds-NP_014631.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:286664-287068:- | gene-YOL012C_ThermosaccDry | rna-NM_001183266.1_ThermosaccDry | cds-NP_014631.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:287424-287828:- | gene-YOL012C_VR1 | rna-NM_001183266.1_VR1 | cds-NP_014631.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:21335-21739:- | gene-YOL012C_ZTW1 | rna-NM_001183266.1_ZTW1 | cds-NP_014631.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:294960-295364:- | gene-YOL012C_Sparadoxus | rna-NM_001183266.1_Sparadoxus | cds-NP_014631.1_Sparadoxus | 94.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |