Gene name: HTL1
Reference locus (S288C): YCR020W-B
Gene biotype: protein_coding
Description: High temperature lethal protein 1; Component of the RSC chromatin remodeling complex; RSC functions in transcriptional regulation and elongation, chromosome stability, and establishing sister chromatid cohesion; involved in telomere maintenance
Top 10 interactors (score): NPL6 (0.999); RSC58 (0.999); RSC8 (0.999); STH1 (0.998); RSC4 (0.998); LDB7 (0.998); RSC3 (0.997); RSC9 (0.997); RSC2 (0.997); RSC6 (0.997); RTT102 (0.997); RSC30 (0.996); ARP7 (0.994); ARP9 (0.994); SFH1 (0.992); RSC1 (0.979); MAK31 (0.69); SNF5 (0.578); BUD19 (0.571); MAK32 (0.568)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:149804-150040:+ | gene-YCR020W-B_AKU4011 | rna-NM_001184313.1_AKU4011 | cds-NP_009949.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:3960-4196:+ | gene-YCR020W-B_BG1 | rna-NM_001184313.1_BG1 | cds-NP_009949.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:145126-145362:+ | gene-YCR020W-B_Bruggeman | rna-NM_001184313.1_Bruggeman | cds-NP_009949.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:156696-156932:+ | gene-YCR020W-B_CAT1 | rna-NM_001184313.1_CAT1 | cds-NP_009949.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:144565-144801:+ | gene-YCR020W-B_CBS1585 | rna-NM_001184313.1_CBS1585 | cds-NP_009949.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:155707-155943:+ | gene-YCR020W-B_CBS436 | rna-NM_001184313.1_CBS436 | cds-NP_009949.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:138418-138654:+ | gene-YCR020W-B_CBS6412 | rna-NM_001184313.1_CBS6412 | cds-NP_009949.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:150742-150978:+ | gene-YCR020W-B_CBS6413 | rna-NM_001184313.1_CBS6413 | cds-NP_009949.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:154803-155039:+ | gene-YCR020W-B_CENPK1137D | rna-NM_001184313.1_CENPK1137D | cds-NP_009949.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:147812-148048:+ | gene-YCR020W-B_EthanolRed | rna-NM_001184313.1_EthanolRed | cds-NP_009949.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:150673-150909:+ | gene-YCR020W-B_FaliES1 | rna-NM_001184313.1_FaliES1 | cds-NP_009949.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000371.1:12862-13098:- | gene-YCR020W-B_JAY291 | rna-NM_001184313.1_JAY291 | cds-NP_009949.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:142305-142541:+ | gene-YCR020W-B_MUCL30387 | rna-NM_001184313.1_MUCL30387 | cds-NP_009949.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:142573-142809:+ | gene-YCR020W-B_MUCL30388 | rna-NM_001184313.1_MUCL30388 | cds-NP_009949.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:150889-151125:+ | gene-YCR020W-B_MUCL39482 | rna-NM_001184313.1_MUCL39482 | cds-NP_009949.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:147285-147521:+ | gene-YCR020W-B_MUCL42920 | rna-NM_001184313.1_MUCL42920 | cds-NP_009949.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:154952-155188:+ | gene-YCR020W-B_NCIM3186 | rna-NM_001184313.1_NCIM3186 | cds-NP_009949.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:152653-152889:+ | gene-YCR020W-B_NCYC1407 | rna-NM_001184313.1_NCYC1407 | cds-NP_009949.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:161359-161595:+ | gene-YCR020W-B_PE2H3 | rna-NM_001184313.1_PE2H3 | cds-NP_009949.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:155980-156216:+ | gene-YCR020W-B_PE2H4 | rna-NM_001184313.1_PE2H4 | cds-NP_009949.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:155320-155556:+ | gene-YCR020W-B_S288C | rna-NM_001184313.1_S288C | cds-NP_009949.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000083.1:3851-4087:+ | gene-YCR020W-B_SA1 | rna-NM_001184313.1_SA1 | cds-NP_009949.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:150744-150980:+ | gene-YCR020W-B_ThermosaccDry | rna-NM_001184313.1_ThermosaccDry | cds-NP_009949.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:161511-161747:+ | gene-YCR020W-B_VR1 | rna-NM_001184313.1_VR1 | cds-NP_009949.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:149678-149914:+ | gene-YCR020W-B_ZTW1 | rna-NM_001184313.1_ZTW1 | cds-NP_009949.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:182926-183162:+ | gene-YCR020W-B_Sparadoxus | rna-NM_001184313.1_Sparadoxus | cds-NP_009949.1_Sparadoxus | 93.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |