Gene name: HTB2
Reference locus (S288C): YBL002W
Gene biotype: protein_coding
Description: Histone H2B; core histone protein required for chromatin assembly and chromosome function; nearly identical to HTB1; Rad6p-Bre1p-Lge1p mediated ubiquitination regulates reassembly after DNA replication, transcriptional activation, meiotic DSB formation and H3 methylation
Top 10 interactors (score): HTA2 (0.999); HTB1 (0.999); HHT1 (0.999); HTA1 (0.999); HHF2 (0.999); HHT2 (0.999); HTZ1 (0.999); HHF1 (0.999); NAP1 (0.997); SPT16 (0.996); CSE4 (0.994); BRE1 (0.985); HHO1 (0.981); POB3 (0.979); TOP1 (0.974); UBP8 (0.974); RAD6 (0.973); SIR3 (0.963); HDA1 (0.961); SLD5 (0.956)
Homologues (species, bitscore): HIST2H2BF (Homo sapiens, 181.0); Hist2h2bb (Mus musculus, 181.4); hist2h2l (Danio rerio, 174.5); H2bc12 (Xenopus tropicalis, 179.5); FBpp0085281 (Drosophila melanogaster, 170.6); his-41 (Caenorhabditis elegans, 180.3); AT2G37470 (Arabidopsis thaliana, 173.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:224878-225273:+ | gene-YBL002W_AKU4011 | rna-NM_001178242.1_AKU4011 | cds-NP_009553.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:214987-215382:+ | gene-YBL002W_BG1 | rna-NM_001178242.1_BG1 | cds-NP_009553.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:225577-225972:+ | gene-YBL002W_Bruggeman | rna-NM_001178242.1_Bruggeman | cds-NP_009553.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:227861-228256:+ | gene-YBL002W_CAT1 | rna-NM_001178242.1_CAT1 | cds-NP_009553.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:216918-217313:+ | gene-YBL002W_CBS1585 | rna-NM_001178242.1_CBS1585 | cds-NP_009553.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:225159-225554:+ | gene-YBL002W_CBS436 | rna-NM_001178242.1_CBS436 | cds-NP_009553.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:315418-315813:+ | gene-YBL002W_CBS6412 | rna-NM_001178242.1_CBS6412 | cds-NP_009553.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:222283-222678:+ | gene-YBL002W_CBS6413 | rna-NM_001178242.1_CBS6413 | cds-NP_009553.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:236179-236574:+ | gene-YBL002W_CENPK1137D | rna-NM_001178242.1_CENPK1137D | cds-NP_009553.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:351876-352271:+ | gene-YBL002W_EthanolRed | rna-NM_001178242.1_EthanolRed | cds-NP_009553.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:239726-240121:+ | gene-YBL002W_FaliES1 | rna-NM_001178242.1_FaliES1 | cds-NP_009553.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000048.1:57229-57624:- | gene-YBL002W_JAY291 | rna-NM_001178242.1_JAY291 | cds-NP_009553.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:225934-226329:+ | gene-YBL002W_MUCL30387 | rna-NM_001178242.1_MUCL30387 | cds-NP_009553.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:225873-226268:+ | gene-YBL002W_MUCL30388 | rna-NM_001178242.1_MUCL30388 | cds-NP_009553.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:216899-217294:+ | gene-YBL002W_MUCL39482 | rna-NM_001178242.1_MUCL39482 | cds-NP_009553.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:224339-224734:+ | gene-YBL002W_MUCL42920 | rna-NM_001178242.1_MUCL42920 | cds-NP_009553.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:236289-236684:+ | gene-YBL002W_NCIM3186 | rna-NM_001178242.1_NCIM3186 | cds-NP_009553.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:218074-218469:+ | gene-YBL002W_NCYC1407 | rna-NM_001178242.1_NCYC1407 | cds-NP_009553.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:230234-230629:+ | gene-YBL002W_PE2H3 | rna-NM_001178242.1_PE2H3 | cds-NP_009553.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:227890-228285:+ | gene-YBL002W_PE2H4 | rna-NM_001178242.1_PE2H4 | cds-NP_009553.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:236492-236887:+ | gene-YBL002W_S288C | rna-NM_001178242.1_S288C | cds-NP_009553.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000037.1:65895-66290:- | gene-YBL002W_SA1 | rna-NM_001178242.1_SA1 | cds-NP_009553.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:239432-239827:+ | gene-YBL002W_ThermosaccDry | rna-NM_001178242.1_ThermosaccDry | cds-NP_009553.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:221574-221969:+ | gene-YBL002W_VR1 | rna-NM_001178242.1_VR1 | cds-NP_009553.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:215666-216061:+ | gene-YBL002W_ZTW1 | rna-NM_001178242.1_ZTW1 | cds-NP_009553.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:251199-251591:+ | gene-YBL002W_Sparadoxus | rna-NM_001178242.1_Sparadoxus | cds-NP_009553.1_Sparadoxus | 92.1 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |