Gene name: HTB1
Reference locus (S288C): YDR224C
Gene biotype: protein_coding
Description: Histone H2B; core histone protein required for chromatin assembly and chromosome function; nearly identical to HTB2; Rad6p-Bre1p-Lge1p mediated ubiquitination regulates reassembly after DNA replication, transcriptional activation, meiotic DSB formation and H3 methylation
Top 10 interactors (score): HTB2 (0.999); HTZ1 (0.999); HHF1 (0.999); HHT2 (0.999); HHF2 (0.999); HTA1 (0.999); HHT1 (0.999); HTA2 (0.999); SPT16 (0.998); NAP1 (0.995); POB3 (0.995); CSE4 (0.994); BRE1 (0.991); UBP8 (0.987); SIR3 (0.987); HHO1 (0.982); SWR1 (0.977); SIR2 (0.975); RAD6 (0.975); HDA1 (0.972)
Homologues (species, bitscore): HIST1H2BC (Homo sapiens, 181.0); Hist1h2bq (Mus musculus, 182.2); hist2h2l (Danio rerio, 175.3); H2bc12 (Xenopus tropicalis, 181.4); FBpp0085281 (Drosophila melanogaster, 172.6); his-41 (Caenorhabditis elegans, 183.0); AT2G37470 (Arabidopsis thaliana, 174.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:871017-871412:- | gene-YDR224C_AKU4011 | rna-NM_001180532.3_AKU4011 | cds-NP_010510.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:254420-254815:+ | gene-YDR224C_BG1 | rna-NM_001180532.3_BG1 | cds-NP_010510.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:903337-903732:- | gene-YDR224C_Bruggeman | rna-NM_001180532.3_Bruggeman | cds-NP_010510.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:890613-891008:- | gene-YDR224C_CAT1 | rna-NM_001180532.3_CAT1 | cds-NP_010510.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:861369-861764:- | gene-YDR224C_CBS1585 | rna-NM_001180532.3_CBS1585 | cds-NP_010510.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:890378-890773:- | gene-YDR224C_CBS436 | rna-NM_001180532.3_CBS436 | cds-NP_010510.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:858127-858522:- | gene-YDR224C_CBS6412 | rna-NM_001180532.3_CBS6412 | cds-NP_010510.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:888728-889123:- | gene-YDR224C_CBS6413 | rna-NM_001180532.3_CBS6413 | cds-NP_010510.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:913118-913513:- | gene-YDR224C_CENPK1137D | rna-NM_001180532.3_CENPK1137D | cds-NP_010510.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:871710-872105:- | gene-YDR224C_EthanolRed | rna-NM_001180532.3_EthanolRed | cds-NP_010510.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:879912-880307:- | gene-YDR224C_FaliES1 | rna-NM_001180532.3_FaliES1 | cds-NP_010510.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000348.1:31266-31661:+ | gene-YDR224C_JAY291 | rna-NM_001180532.3_JAY291 | cds-NP_010510.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:888986-889381:- | gene-YDR224C_MUCL30387 | rna-NM_001180532.3_MUCL30387 | cds-NP_010510.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:877240-877635:- | gene-YDR224C_MUCL30388 | rna-NM_001180532.3_MUCL30388 | cds-NP_010510.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:862772-863167:- | gene-YDR224C_MUCL39482 | rna-NM_001180532.3_MUCL39482 | cds-NP_010510.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:802058-802453:- | gene-YDR224C_MUCL42920 | rna-NM_001180532.3_MUCL42920 | cds-NP_010510.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:914240-914635:- | gene-YDR224C_NCIM3186 | rna-NM_001180532.3_NCIM3186 | cds-NP_010510.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:866442-866837:- | gene-YDR224C_NCYC1407 | rna-NM_001180532.3_NCYC1407 | cds-NP_010510.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:882670-883065:- | gene-YDR224C_PE2H3 | rna-NM_001180532.3_PE2H3 | cds-NP_010510.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:887951-888346:- | gene-YDR224C_PE2H4 | rna-NM_001180532.3_PE2H4 | cds-NP_010510.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:914317-914712:- | gene-YDR224C_S288C | rna-NM_001180532.3_S288C | cds-NP_010510.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:120425-120820:- | gene-YDR224C_SA1 | rna-NM_001180532.3_SA1 | cds-NP_010510.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:878066-878461:- | gene-YDR224C_ThermosaccDry | rna-NM_001180532.3_ThermosaccDry | cds-NP_010510.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:893274-893669:- | gene-YDR224C_VR1 | rna-NM_001180532.3_VR1 | cds-NP_010510.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:140782-141177:- | gene-YDR224C_ZTW1 | rna-NM_001180532.3_ZTW1 | cds-NP_010510.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:883062-883457:- | gene-YDR224C_Sparadoxus | rna-NM_001180532.3_Sparadoxus | cds-NP_010510.3_Sparadoxus | 95.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |