Gene name: HTA2
Reference locus (S288C): YBL003C
Gene biotype: protein_coding
Description: Histone H2A; core histone protein required for chromatin assembly and chromosome function; one of two nearly identical (see also HTA1) subtypes; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p
Top 10 interactors (score): HHT2 (0.999); HHF2 (0.999); NAP1 (0.999); HHF1 (0.999); HTB2 (0.999); HTB1 (0.999); HTA1 (0.999); HHT1 (0.999); RAD9 (0.998); SPT16 (0.997); POB3 (0.996); CSE4 (0.996); HTZ1 (0.996); HHO1 (0.994); SIR3 (0.986); TEL1 (0.977); RTT107 (0.975); MCM2 (0.974); ESA1 (0.973); MRC1 (0.969)
Homologues (species, bitscore): HIST2H2AA (Homo sapiens, 194.1); H2afx (Mus musculus, 194.1); hist1h2a3 (Danio rerio, 198.0); LOC100487455 (Xenopus tropicalis, 195.7); His2A (Drosophila melanogaster, 193.7); his-35 (Caenorhabditis elegans, 194.5); H2AXA (Arabidopsis thaliana, 188.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:223780-224178:- | gene-YBL003C_AKU4011 | rna-NM_001178243.1_AKU4011 | cds-NP_009552.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:213893-214291:- | gene-YBL003C_BG1 | rna-NM_001178243.1_BG1 | cds-NP_009552.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:224479-224877:- | gene-YBL003C_Bruggeman | rna-NM_001178243.1_Bruggeman | cds-NP_009552.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:226763-227161:- | gene-YBL003C_CAT1 | rna-NM_001178243.1_CAT1 | cds-NP_009552.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:215820-216218:- | gene-YBL003C_CBS1585 | rna-NM_001178243.1_CBS1585 | cds-NP_009552.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:224065-224463:- | gene-YBL003C_CBS436 | rna-NM_001178243.1_CBS436 | cds-NP_009552.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:314320-314718:- | gene-YBL003C_CBS6412 | rna-NM_001178243.1_CBS6412 | cds-NP_009552.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:221185-221583:- | gene-YBL003C_CBS6413 | rna-NM_001178243.1_CBS6413 | cds-NP_009552.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:235082-235480:- | gene-YBL003C_CENPK1137D | rna-NM_001178243.1_CENPK1137D | cds-NP_009552.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:350778-351176:- | gene-YBL003C_EthanolRed | rna-NM_001178243.1_EthanolRed | cds-NP_009552.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:238628-239026:- | gene-YBL003C_FaliES1 | rna-NM_001178243.1_FaliES1 | cds-NP_009552.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000048.1:58320-58718:+ | gene-YBL003C_JAY291 | rna-NM_001178243.1_JAY291 | cds-NP_009552.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:224836-225234:- | gene-YBL003C_MUCL30387 | rna-NM_001178243.1_MUCL30387 | cds-NP_009552.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:224776-225174:- | gene-YBL003C_MUCL30388 | rna-NM_001178243.1_MUCL30388 | cds-NP_009552.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:215801-216199:- | gene-YBL003C_MUCL39482 | rna-NM_001178243.1_MUCL39482 | cds-NP_009552.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:223245-223643:- | gene-YBL003C_MUCL42920 | rna-NM_001178243.1_MUCL42920 | cds-NP_009552.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:235191-235589:- | gene-YBL003C_NCIM3186 | rna-NM_001178243.1_NCIM3186 | cds-NP_009552.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:216976-217374:- | gene-YBL003C_NCYC1407 | rna-NM_001178243.1_NCYC1407 | cds-NP_009552.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:229140-229538:- | gene-YBL003C_PE2H3 | rna-NM_001178243.1_PE2H3 | cds-NP_009552.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:226792-227190:- | gene-YBL003C_PE2H4 | rna-NM_001178243.1_PE2H4 | cds-NP_009552.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:235394-235792:- | gene-YBL003C_S288C | rna-NM_001178243.1_S288C | cds-NP_009552.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000037.1:66990-67388:+ | gene-YBL003C_SA1 | rna-NM_001178243.1_SA1 | cds-NP_009552.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:238334-238732:- | gene-YBL003C_ThermosaccDry | rna-NM_001178243.1_ThermosaccDry | cds-NP_009552.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:220480-220878:- | gene-YBL003C_VR1 | rna-NM_001178243.1_VR1 | cds-NP_009552.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:214568-214966:- | gene-YBL003C_ZTW1 | rna-NM_001178243.1_ZTW1 | cds-NP_009552.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:250106-250504:- | gene-YBL003C_Sparadoxus | rna-NM_001178243.1_Sparadoxus | cds-NP_009552.1_Sparadoxus | 95.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |