Gene name: HTA1
Reference locus (S288C): YDR225W
Gene biotype: protein_coding
Description: Histone H2A; core histone protein required for chromatin assembly and chromosome function; one of two nearly identical subtypes (see also HTA2); DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p; N-terminally propionylated in vivo
Top 10 interactors (score): HHF1 (0.999); NAP1 (0.999); HHF2 (0.999); HHT2 (0.999); HTB2 (0.999); HTA2 (0.999); HHT1 (0.999); HTB1 (0.999); POB3 (0.998); HTZ1 (0.998); RAD9 (0.998); SPT16 (0.998); CSE4 (0.997); HHO1 (0.99); SWR1 (0.988); RTT107 (0.984); HDA1 (0.982); ESA1 (0.979); TEL1 (0.977); ARP6 (0.976)
Homologues (species, bitscore): H2AFX (Homo sapiens, 195.3); H2afx (Mus musculus, 195.3); LOC565202 (Danio rerio, 199.1); ENSXETP00000018170 (Xenopus tropicalis, 194.5); His2A (Drosophila melanogaster, 192.6); his-35 (Caenorhabditis elegans, 194.5); H2AXA (Arabidopsis thaliana, 187.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:872230-872628:+ | gene-YDR225W_AKU4011 | rna-NM_001180533.3_AKU4011 | cds-NP_010511.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:253204-253602:- | gene-YDR225W_BG1 | rna-NM_001180533.3_BG1 | cds-NP_010511.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:904549-904947:+ | gene-YDR225W_Bruggeman | rna-NM_001180533.3_Bruggeman | cds-NP_010511.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:891826-892224:+ | gene-YDR225W_CAT1 | rna-NM_001180533.3_CAT1 | cds-NP_010511.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:862582-862980:+ | gene-YDR225W_CBS1585 | rna-NM_001180533.3_CBS1585 | cds-NP_010511.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:891591-891989:+ | gene-YDR225W_CBS436 | rna-NM_001180533.3_CBS436 | cds-NP_010511.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:859340-859738:+ | gene-YDR225W_CBS6412 | rna-NM_001180533.3_CBS6412 | cds-NP_010511.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:889941-890339:+ | gene-YDR225W_CBS6413 | rna-NM_001180533.3_CBS6413 | cds-NP_010511.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:914331-914729:+ | gene-YDR225W_CENPK1137D | rna-NM_001180533.3_CENPK1137D | cds-NP_010511.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:872922-873320:+ | gene-YDR225W_EthanolRed | rna-NM_001180533.3_EthanolRed | cds-NP_010511.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:881124-881522:+ | gene-YDR225W_FaliES1 | rna-NM_001180533.3_FaliES1 | cds-NP_010511.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000348.1:30050-30448:- | gene-YDR225W_JAY291 | rna-NM_001180533.3_JAY291 | cds-NP_010511.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:890198-890596:+ | gene-YDR225W_MUCL30387 | rna-NM_001180533.3_MUCL30387 | cds-NP_010511.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:878452-878850:+ | gene-YDR225W_MUCL30388 | rna-NM_001180533.3_MUCL30388 | cds-NP_010511.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:863985-864383:+ | gene-YDR225W_MUCL39482 | rna-NM_001180533.3_MUCL39482 | cds-NP_010511.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:803271-803669:+ | gene-YDR225W_MUCL42920 | rna-NM_001180533.3_MUCL42920 | cds-NP_010511.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:915453-915851:+ | gene-YDR225W_NCIM3186 | rna-NM_001180533.3_NCIM3186 | cds-NP_010511.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:867655-868053:+ | gene-YDR225W_NCYC1407 | rna-NM_001180533.3_NCYC1407 | cds-NP_010511.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:883883-884281:+ | gene-YDR225W_PE2H3 | rna-NM_001180533.3_PE2H3 | cds-NP_010511.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:889164-889562:+ | gene-YDR225W_PE2H4 | rna-NM_001180533.3_PE2H4 | cds-NP_010511.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:915530-915928:+ | gene-YDR225W_S288C | rna-NM_001180533.3_S288C | cds-NP_010511.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:121638-122036:+ | gene-YDR225W_SA1 | rna-NM_001180533.3_SA1 | cds-NP_010511.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:879278-879676:+ | gene-YDR225W_ThermosaccDry | rna-NM_001180533.3_ThermosaccDry | cds-NP_010511.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:894487-894885:+ | gene-YDR225W_VR1 | rna-NM_001180533.3_VR1 | cds-NP_010511.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:141995-142393:+ | gene-YDR225W_ZTW1 | rna-NM_001180533.3_ZTW1 | cds-NP_010511.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:884275-884673:+ | gene-YDR225W_Sparadoxus | rna-NM_001180533.3_Sparadoxus | cds-NP_010511.3_Sparadoxus | 96.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |