Gene name: HSV2
Reference locus (S288C): YGR223C
Gene biotype: protein_coding
Description: SVP1-like protein 2; Phosphatidylinositol 3,5-bisphosphate-binding protein; plays a role in micronucleophagy; belongs to the PROPPIN family of proteins; predicted to fold as a seven-bladed beta-propeller; displays punctate cytoplasmic localization; Belongs to the WD repeat SVP1 family
Top 10 interactors (score): ATG2 (0.981); ATG9 (0.948); VPS30 (0.92); ATG7 (0.908); ATG5 (0.894); ATG12 (0.851); ATG15 (0.837); VPS34 (0.813); ATG21 (0.801); ATG1 (0.799); ATG8 (0.781); ATG4 (0.766); ATG3 (0.766); VPS15 (0.725); FAB1 (0.719); ATG18 (0.702); ATG13 (0.661); TLG2 (0.644); YLR001C (0.644); CLG1 (0.639)
Homologues (species, bitscore): WDR45B (Homo sapiens, 194.1); Wdr45b (Mus musculus, 193.7); wdr45l (Danio rerio, 194.1); wdr45b (Xenopus tropicalis, 196.1); CG11975 (Drosophila melanogaster, 178.3); atg-18 (Caenorhabditis elegans, 95.9); AtATG18a (Arabidopsis thaliana, 170.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:906171-907517:- | gene-YGR223C_AKU4011 | rna-NM_001181352.1_AKU4011 | cds-NP_011739.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:186394-187740:- | gene-YGR223C_BG1 | rna-NM_001181352.1_BG1 | cds-NP_011739.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:913875-915221:- | gene-YGR223C_Bruggeman | rna-NM_001181352.1_Bruggeman | cds-NP_011739.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:912125-913471:- | gene-YGR223C_CAT1 | rna-NM_001181352.1_CAT1 | cds-NP_011739.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:909121-910467:- | gene-YGR223C_CBS1585 | rna-NM_001181352.1_CBS1585 | cds-NP_011739.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:912803-914149:- | gene-YGR223C_CBS436 | rna-NM_001181352.1_CBS436 | cds-NP_011739.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:899991-901337:- | gene-YGR223C_CBS6412 | rna-NM_001181352.1_CBS6412 | cds-NP_011739.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:906050-907396:- | gene-YGR223C_CBS6413 | rna-NM_001181352.1_CBS6413 | cds-NP_011739.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:940451-941797:- | gene-YGR223C_CENPK1137D | rna-NM_001181352.1_CENPK1137D | cds-NP_011739.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:894501-895847:- | gene-YGR223C_EthanolRed | rna-NM_001181352.1_EthanolRed | cds-NP_011739.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:898892-900238:- | gene-YGR223C_FaliES1 | rna-NM_001181352.1_FaliES1 | cds-NP_011739.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000076.1:130026-131372:+ | gene-YGR223C_JAY291 | rna-NM_001181352.1_JAY291 | cds-NP_011739.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:911790-913136:- | gene-YGR223C_MUCL30387 | rna-NM_001181352.1_MUCL30387 | cds-NP_011739.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:911046-912392:- | gene-YGR223C_MUCL30388 | rna-NM_001181352.1_MUCL30388 | cds-NP_011739.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:904198-905544:- | gene-YGR223C_MUCL39482 | rna-NM_001181352.1_MUCL39482 | cds-NP_011739.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:922750-924096:- | gene-YGR223C_MUCL42920 | rna-NM_001181352.1_MUCL42920 | cds-NP_011739.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:940869-942215:- | gene-YGR223C_NCIM3186 | rna-NM_001181352.1_NCIM3186 | cds-NP_011739.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:899850-901196:- | gene-YGR223C_NCYC1407 | rna-NM_001181352.1_NCYC1407 | cds-NP_011739.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:924790-926136:- | gene-YGR223C_PE2H3 | rna-NM_001181352.1_PE2H3 | cds-NP_011739.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:929899-931245:- | gene-YGR223C_PE2H4 | rna-NM_001181352.1_PE2H4 | cds-NP_011739.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:940869-942215:- | gene-YGR223C_S288C | rna-NM_001181352.1_S288C | cds-NP_011739.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000045.1:59550-60896:+ | gene-YGR223C_SA1 | rna-NM_001181352.1_SA1 | cds-NP_011739.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:919403-920749:- | gene-YGR223C_ThermosaccDry | rna-NM_001181352.1_ThermosaccDry | cds-NP_011739.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:1024217-1025563:- | gene-YGR223C_VR1 | rna-NM_001181352.1_VR1 | cds-NP_011739.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:220839-222185:- | gene-YGR223C_ZTW1 | rna-NM_001181352.1_ZTW1 | cds-NP_011739.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:911553-912905:- | gene-YGR223C_Sparadoxus | rna-NM_001181352.1_Sparadoxus | cds-NP_011739.1_Sparadoxus | 87.5 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |