Gene name: HSP42
Reference locus (S288C): YDR171W
Gene biotype: protein_coding
Description: Small heat shock protein (sHSP) with chaperone activity; forms barrel-shaped oligomers that suppress unfolded protein aggregation; involved in cytoskeleton reorganization after heat shock; protein abundance increases and forms cytoplasmic foci in response to DNA replication stress
Top 10 interactors (score): HSP104 (0.999); BTN2 (0.998); HSP78 (0.994); SIS1 (0.99); SSE2 (0.988); SSA4 (0.985); CUR1 (0.976); YJL144W (0.972); HSP26 (0.961); FES1 (0.956); TSL1 (0.949); GAD1 (0.948); HSP82 (0.947); PNC1 (0.94); OPI10 (0.938); SOL4 (0.934); RTC3 (0.927); TPS2 (0.926); SDS24 (0.922); AIM17 (0.922)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:775156-776283:+ | gene-YDR171W_AKU4011 | rna-NM_001180478.1_AKU4011 | cds-NP_010456.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:349520-350647:- | gene-YDR171W_BG1 | rna-NM_001180478.1_BG1 | cds-NP_010456.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:807575-808702:+ | gene-YDR171W_Bruggeman | rna-NM_001180478.1_Bruggeman | cds-NP_010456.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:794822-795949:+ | gene-YDR171W_CAT1 | rna-NM_001180478.1_CAT1 | cds-NP_010456.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:765522-766649:+ | gene-YDR171W_CBS1585 | rna-NM_001180478.1_CBS1585 | cds-NP_010456.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:794487-795614:+ | gene-YDR171W_CBS436 | rna-NM_001180478.1_CBS436 | cds-NP_010456.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:762328-763455:+ | gene-YDR171W_CBS6412 | rna-NM_001180478.1_CBS6412 | cds-NP_010456.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:792851-793978:+ | gene-YDR171W_CBS6413 | rna-NM_001180478.1_CBS6413 | cds-NP_010456.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:805427-806554:+ | gene-YDR171W_CENPK1137D | rna-NM_001180478.1_CENPK1137D | cds-NP_010456.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:775908-777035:+ | gene-YDR171W_EthanolRed | rna-NM_001180478.1_EthanolRed | cds-NP_010456.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:784120-785247:+ | gene-YDR171W_FaliES1 | rna-NM_001180478.1_FaliES1 | cds-NP_010456.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000068.1:64113-65240:- | gene-YDR171W_JAY291 | rna-NM_001180478.1_JAY291 | cds-NP_010456.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:793202-794329:+ | gene-YDR171W_MUCL30387 | rna-NM_001180478.1_MUCL30387 | cds-NP_010456.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:781463-782590:+ | gene-YDR171W_MUCL30388 | rna-NM_001180478.1_MUCL30388 | cds-NP_010456.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:766949-768076:+ | gene-YDR171W_MUCL39482 | rna-NM_001180478.1_MUCL39482 | cds-NP_010456.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:705659-706786:+ | gene-YDR171W_MUCL42920 | rna-NM_001180478.1_MUCL42920 | cds-NP_010456.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:806544-807671:+ | gene-YDR171W_NCIM3186 | rna-NM_001180478.1_NCIM3186 | cds-NP_010456.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:770104-771231:+ | gene-YDR171W_NCYC1407 | rna-NM_001180478.1_NCYC1407 | cds-NP_010456.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:786820-787947:+ | gene-YDR171W_PE2H3 | rna-NM_001180478.1_PE2H3 | cds-NP_010456.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:786125-787252:+ | gene-YDR171W_PE2H4 | rna-NM_001180478.1_PE2H4 | cds-NP_010456.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:806621-807748:+ | gene-YDR171W_S288C | rna-NM_001180478.1_S288C | cds-NP_010456.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:152331-153458:+ | gene-YDR171W_SA1 | rna-NM_001180478.1_SA1 | cds-NP_010456.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:782255-783382:+ | gene-YDR171W_ThermosaccDry | rna-NM_001180478.1_ThermosaccDry | cds-NP_010456.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:797519-798646:+ | gene-YDR171W_VR1 | rna-NM_001180478.1_VR1 | cds-NP_010456.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:44989-46116:+ | gene-YDR171W_ZTW1 | rna-NM_001180478.1_ZTW1 | cds-NP_010456.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:787469-788596:+ | gene-YDR171W_Sparadoxus | rna-NM_001180478.1_Sparadoxus | cds-NP_010456.1_Sparadoxus | 86.3 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |