Gene name: HSM3
Reference locus (S288C): YBR272C
Gene biotype: protein_coding
Description: DNA mismatch repair protein HSM3; Evolutionarily conserved 19S regulatory particle assembly-chaperone; involved in the assembly of the base subcomplex of the 19S proteasomal regulatory particle (RP); involved in DNA mismatch repair during slow growth; weak similarity to Msh1p; structural study suggests Hsm3p is a scaffold protein for Rpt1p-Rpt2p complex formation; ortholog of human 19S subunit S5b
Top 10 interactors (score): RPT1 (0.999); RPT2 (0.997); RPT5 (0.996); RPT6 (0.994); NAS6 (0.993); NAS2 (0.993); RPN14 (0.991); RPT3 (0.989); RPT4 (0.983); RPN1 (0.981); RPN13 (0.972); RPN2 (0.954); RPN12 (0.946); RPN6 (0.946); RPN9 (0.944); RPN3 (0.942); RPN5 (0.94); RPN10 (0.934); RPN8 (0.925); RAD2 (0.862)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:730644-732082:- | gene-YBR272C_AKU4011 | rna-NM_001178620.3_AKU4011 | cds-NP_009831.3_AKU4011 | 99.6 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:101664-103102:- | gene-YBR272C_BG1 | rna-NM_001178620.3_BG1 | cds-NP_009831.3_BG1 | 99.2 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:731803-733241:- | gene-YBR272C_Bruggeman | rna-NM_001178620.3_Bruggeman | cds-NP_009831.3_Bruggeman | 99.3 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:735530-736968:- | gene-YBR272C_CAT1 | rna-NM_001178620.3_CAT1 | cds-NP_009831.3_CAT1 | 99.1 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:722210-723648:- | gene-YBR272C_CBS1585 | rna-NM_001178620.3_CBS1585 | cds-NP_009831.3_CBS1585 | 99.5 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:728651-730089:- | gene-YBR272C_CBS436 | rna-NM_001178620.3_CBS436 | cds-NP_009831.3_CBS436 | 99.2 | 99.7 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:816825-818263:- | gene-YBR272C_CBS6412 | rna-NM_001178620.3_CBS6412 | cds-NP_009831.3_CBS6412 | 99.5 | 99.7 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:728258-729696:- | gene-YBR272C_CBS6413 | rna-NM_001178620.3_CBS6413 | cds-NP_009831.3_CBS6413 | 99.6 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:740265-741703:- | gene-YBR272C_CENPK1137D | rna-NM_001178620.3_CENPK1137D | cds-NP_009831.3_CENPK1137D | 99.6 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:853679-855117:- | gene-YBR272C_EthanolRed | rna-NM_001178620.3_EthanolRed | cds-NP_009831.3_EthanolRed | 99.6 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:747026-748464:- | gene-YBR272C_FaliES1 | rna-NM_001178620.3_FaliES1 | cds-NP_009831.3_FaliES1 | 99.6 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:55597-57035:+ | gene-YBR272C_JAY291 | rna-NM_001178620.3_JAY291 | cds-NP_009831.3_JAY291 | 99.3 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:733846-735284:- | gene-YBR272C_MUCL30387 | rna-NM_001178620.3_MUCL30387 | cds-NP_009831.3_MUCL30387 | 99.3 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:750927-752365:- | gene-YBR272C_MUCL30388 | rna-NM_001178620.3_MUCL30388 | cds-NP_009831.3_MUCL30388 | 99.3 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:720517-721955:- | gene-YBR272C_MUCL39482 | rna-NM_001178620.3_MUCL39482 | cds-NP_009831.3_MUCL39482 | 99.5 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:730383-731821:- | gene-YBR272C_MUCL42920 | rna-NM_001178620.3_MUCL42920 | cds-NP_009831.3_MUCL42920 | 99.3 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:746158-747600:- | gene-YBR272C_NCIM3186 | rna-NM_001178620.3_NCIM3186 | cds-NP_009831.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:722406-723844:- | gene-YBR272C_NCYC1407 | rna-NM_001178620.3_NCYC1407 | cds-NP_009831.3_NCYC1407 | 99.5 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:745532-746970:- | gene-YBR272C_PE2H3 | rna-NM_001178620.3_PE2H3 | cds-NP_009831.3_PE2H3 | 99.3 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:743208-744646:- | gene-YBR272C_PE2H4 | rna-NM_001178620.3_PE2H4 | cds-NP_009831.3_PE2H4 | 99.3 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:746361-747803:- | gene-YBR272C_S288C | rna-NM_001178620.3_S288C | cds-NP_009831.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:101486-102924:- | gene-YBR272C_SA1 | rna-NM_001178620.3_SA1 | cds-NP_009831.3_SA1 | 99.2 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:746018-747456:- | gene-YBR272C_ThermosaccDry | rna-NM_001178620.3_ThermosaccDry | cds-NP_009831.3_ThermosaccDry | 99.6 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:726230-727668:- | gene-YBR272C_VR1 | rna-NM_001178620.3_VR1 | cds-NP_009831.3_VR1 | 99.2 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:718863-720301:- | gene-YBR272C_ZTW1 | rna-NM_001178620.3_ZTW1 | cds-NP_009831.3_ZTW1 | 99.6 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:762774-764212:- | gene-YBR272C_Sparadoxus | rna-NM_001178620.3_Sparadoxus | cds-NP_009831.3_Sparadoxus | 88.1 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |