Gene name: HSH49
Reference locus (S288C): YOR319W
Gene biotype: protein_coding
Description: Protein HSH49; U2-snRNP associated splicing factor; similar to the mammalian splicing factor SAP49; proposed to function as a U2-snRNP assembly factor along with Hsh155p and binding partner Cus1p; contains two RNA recognition motifs (RRM)
Top 10 interactors (score): PRP6 (0.999); YSF3 (0.999); IST3 (0.999); RDS3 (0.999); PRP21 (0.999); SMB1 (0.999); HSH155 (0.999); PRP11 (0.999); PRP9 (0.999); CUS1 (0.999); LEA1 (0.999); RSE1 (0.999); SMX2 (0.999); MSL1 (0.999); SNU114 (0.999); BUD31 (0.998); SMD2 (0.998); YHC1 (0.997); CDC40 (0.997); BUD13 (0.997)
Homologues (species, bitscore): SF3B4 (Homo sapiens, 132.9); Sf3b4 (Mus musculus, 132.5); sf3b4 (Danio rerio, 132.1); sf3b4 (Xenopus tropicalis, 132.9); Spx (Drosophila melanogaster, 131.3); sap-49 (Caenorhabditis elegans, 129.0); emb2444 (Arabidopsis thaliana, 122.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:903311-903952:+ | gene-YOR319W_AKU4011 | rna-NM_001183739.1_AKU4011 | cds-NP_014964.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:305317-305958:+ | gene-YOR319W_BG1 | rna-NM_001183739.1_BG1 | cds-NP_014964.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:888722-889363:+ | gene-YOR319W_Bruggeman | rna-NM_001183739.1_Bruggeman | cds-NP_014964.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:889433-890074:+ | gene-YOR319W_CAT1 | rna-NM_001183739.1_CAT1 | cds-NP_014964.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:887131-887772:+ | gene-YOR319W_CBS1585 | rna-NM_001183739.1_CBS1585 | cds-NP_014964.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:884956-885597:+ | gene-YOR319W_CBS436 | rna-NM_001183739.1_CBS436 | cds-NP_014964.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:882839-883480:+ | gene-YOR319W_CBS6412 | rna-NM_001183739.1_CBS6412 | cds-NP_014964.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:891967-892608:+ | gene-YOR319W_CBS6413 | rna-NM_001183739.1_CBS6413 | cds-NP_014964.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:912598-913239:+ | gene-YOR319W_CENPK1137D | rna-NM_001183739.1_CENPK1137D | cds-NP_014964.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:879227-879868:+ | gene-YOR319W_EthanolRed | rna-NM_001183739.1_EthanolRed | cds-NP_014964.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:884850-885491:+ | gene-YOR319W_FaliES1 | rna-NM_001183739.1_FaliES1 | cds-NP_014964.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:117776-118417:- | gene-YOR319W_JAY291 | rna-NM_001183739.1_JAY291 | cds-NP_014964.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:892961-893602:+ | gene-YOR319W_MUCL30387 | rna-NM_001183739.1_MUCL30387 | cds-NP_014964.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:900974-901615:+ | gene-YOR319W_MUCL30388 | rna-NM_001183739.1_MUCL30388 | cds-NP_014964.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:893676-894317:+ | gene-YOR319W_MUCL39482 | rna-NM_001183739.1_MUCL39482 | cds-NP_014964.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:903143-903784:+ | gene-YOR319W_MUCL42920 | rna-NM_001183739.1_MUCL42920 | cds-NP_014964.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:912711-913352:+ | gene-YOR319W_NCIM3186 | rna-NM_001183739.1_NCIM3186 | cds-NP_014964.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:894677-895318:+ | gene-YOR319W_NCYC1407 | rna-NM_001183739.1_NCYC1407 | cds-NP_014964.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:892898-893539:+ | gene-YOR319W_PE2H3 | rna-NM_001183739.1_PE2H3 | cds-NP_014964.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:909250-909891:+ | gene-YOR319W_PE2H4 | rna-NM_001183739.1_PE2H4 | cds-NP_014964.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:912822-913463:+ | gene-YOR319W_S288C | rna-NM_001183739.1_S288C | cds-NP_014964.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000016.1:23149-23790:+ | gene-YOR319W_SA1 | rna-NM_001183739.1_SA1 | cds-NP_014964.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:884033-884674:+ | gene-YOR319W_ThermosaccDry | rna-NM_001183739.1_ThermosaccDry | cds-NP_014964.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:947318-947959:+ | gene-YOR319W_VR1 | rna-NM_001183739.1_VR1 | cds-NP_014964.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:616902-617543:+ | gene-YOR319W_ZTW1 | rna-NM_001183739.1_ZTW1 | cds-NP_014964.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:891222-891863:+ | gene-YOR319W_Sparadoxus | rna-NM_001183739.1_Sparadoxus | cds-NP_014964.1_Sparadoxus | 88.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |