HSH155 (YMR288W)


Gene profile

Gene name: HSH155
Reference locus (S288C): YMR288W
Gene biotype: protein_coding

Description: U2-snRNP associated splicing factor; forms extensive associations with the branch site-3' splice site-3' exon region upon prespliceosome formation; similarity to the mammalian U2 snRNP-associated splicing factor SAP155

Top 10 interactors (score): MUD2 (0.999); SNU66 (0.999); SMD2 (0.999); CEF1 (0.999); PRP6 (0.999); SMD3 (0.999); HSH49 (0.999); PRP9 (0.999); CDC40 (0.999); PRP39 (0.999); LEA1 (0.999); PRP19 (0.999); RSE1 (0.999); SNU114 (0.999); SMX2 (0.999); PRP5 (0.999); SMX3 (0.999); PRP8 (0.999); CUS1 (0.999); BRR2 (0.999)

Homologues (species, bitscore): SF3B1 (Homo sapiens, 940.6); Sf3b1 (Mus musculus, 940.6); sf3b1 (Danio rerio, 939.9); sf3b1 (Xenopus tropicalis, 921.8); CG2807 (Drosophila melanogaster, 940.6); T08A11.2 (Caenorhabditis elegans, 914.4); AT5G64270 (Arabidopsis thaliana, 948.7)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005307.1:884624-887539:+ gene-YMR288W_AKU4011 rna-NM_001182795.1_AKU4011 cds-NP_014015.1_AKU4011 99.7 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000069.1:66135-69050:- gene-YMR288W_BG1 rna-NM_001182795.1_BG1 cds-NP_014015.1_BG1 99.5 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005515.1:829832-832747:+ gene-YMR288W_Bruggeman rna-NM_001182795.1_Bruggeman cds-NP_014015.1_Bruggeman 99.5 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005531.1:833118-836033:+ gene-YMR288W_CAT1 rna-NM_001182795.1_CAT1 cds-NP_014015.1_CAT1 99.5 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005371.1:816874-819789:+ gene-YMR288W_CBS1585 rna-NM_001182795.1_CBS1585 cds-NP_014015.1_CBS1585 99.7 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005355.1:839188-842103:+ gene-YMR288W_CBS436 rna-NM_001182795.1_CBS436 cds-NP_014015.1_CBS436 99.5 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005339.1:928448-931363:+ gene-YMR288W_CBS6412 rna-NM_001182795.1_CBS6412 cds-NP_014015.1_CBS6412 99.8 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005323.1:815995-818910:+ gene-YMR288W_CBS6413 rna-NM_001182795.1_CBS6413 cds-NP_014015.1_CBS6413 99.8 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001534.1:840117-843032:+ gene-YMR288W_CENPK1137D rna-NM_001182795.1_CENPK1137D cds-NP_014015.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005486.1:877314-880229:+ gene-YMR288W_EthanolRed rna-NM_001182795.1_EthanolRed cds-NP_014015.1_EthanolRed 99.8 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005547.1:823341-826256:+ gene-YMR288W_FaliES1 rna-NM_001182795.1_FaliES1 cds-NP_014015.1_FaliES1 99.8 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000262.1:25478-28393:- gene-YMR288W_JAY291 rna-NM_001182795.1_JAY291 cds-NP_014015.1_JAY291 99.5 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005419.1:823657-826572:+ gene-YMR288W_MUCL30387 rna-NM_001182795.1_MUCL30387 cds-NP_014015.1_MUCL30387 99.6 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005451.1:833054-835969:+ gene-YMR288W_MUCL30388 rna-NM_001182795.1_MUCL30388 cds-NP_014015.1_MUCL30388 99.6 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005291.1:817962-820877:+ gene-YMR288W_MUCL39482 rna-NM_001182795.1_MUCL39482 cds-NP_014015.1_MUCL39482 99.8 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005435.1:826766-829681:+ gene-YMR288W_MUCL42920 rna-NM_001182795.1_MUCL42920 cds-NP_014015.1_MUCL42920 99.5 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011822.1:845525-848440:+ gene-YMR288W_NCIM3186 rna-NM_001182795.1_NCIM3186 cds-NP_014015.1_NCIM3186 99.5 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005275.1:817605-820520:+ gene-YMR288W_NCYC1407 rna-NM_001182795.1_NCYC1407 cds-NP_014015.1_NCYC1407 99.8 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994152.1:833409-836324:+ gene-YMR288W_PE2H3 rna-NM_001182795.1_PE2H3 cds-NP_014015.1_PE2H3 99.5 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999884.1:829383-832298:+ gene-YMR288W_PE2H4 rna-NM_001182795.1_PE2H4 cds-NP_014015.1_PE2H4 99.5 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001145.3:845571-848486:+ gene-YMR288W_S288C rna-NM_001182795.1_S288C cds-NP_014015.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000036.1:23339-26254:+ gene-YMR288W_SA1 rna-NM_001182795.1_SA1 cds-NP_014015.1_SA1 99.4 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005499.1:819510-822425:+ gene-YMR288W_ThermosaccDry rna-NM_001182795.1_ThermosaccDry cds-NP_014015.1_ThermosaccDry 99.8 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005467.1:833254-836169:+ gene-YMR288W_VR1 rna-NM_001182795.1_VR1 cds-NP_014015.1_VR1 99.4 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000028.1:234744-237659:+ gene-YMR288W_ZTW1 rna-NM_001182795.1_ZTW1 cds-NP_014015.1_ZTW1 99.8 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047499.1:838116-841031:+ gene-YMR288W_Sparadoxus rna-NM_001182795.1_Sparadoxus cds-NP_014015.1_Sparadoxus 89.9 100.0 Verified 1 1 1 False True False False False

Additional files