Gene name: HSH155
Reference locus (S288C): YMR288W
Gene biotype: protein_coding
Description: U2-snRNP associated splicing factor; forms extensive associations with the branch site-3' splice site-3' exon region upon prespliceosome formation; similarity to the mammalian U2 snRNP-associated splicing factor SAP155
Top 10 interactors (score): MUD2 (0.999); SNU66 (0.999); SMD2 (0.999); CEF1 (0.999); PRP6 (0.999); SMD3 (0.999); HSH49 (0.999); PRP9 (0.999); CDC40 (0.999); PRP39 (0.999); LEA1 (0.999); PRP19 (0.999); RSE1 (0.999); SNU114 (0.999); SMX2 (0.999); PRP5 (0.999); SMX3 (0.999); PRP8 (0.999); CUS1 (0.999); BRR2 (0.999)
Homologues (species, bitscore): SF3B1 (Homo sapiens, 940.6); Sf3b1 (Mus musculus, 940.6); sf3b1 (Danio rerio, 939.9); sf3b1 (Xenopus tropicalis, 921.8); CG2807 (Drosophila melanogaster, 940.6); T08A11.2 (Caenorhabditis elegans, 914.4); AT5G64270 (Arabidopsis thaliana, 948.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:884624-887539:+ | gene-YMR288W_AKU4011 | rna-NM_001182795.1_AKU4011 | cds-NP_014015.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:66135-69050:- | gene-YMR288W_BG1 | rna-NM_001182795.1_BG1 | cds-NP_014015.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:829832-832747:+ | gene-YMR288W_Bruggeman | rna-NM_001182795.1_Bruggeman | cds-NP_014015.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:833118-836033:+ | gene-YMR288W_CAT1 | rna-NM_001182795.1_CAT1 | cds-NP_014015.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:816874-819789:+ | gene-YMR288W_CBS1585 | rna-NM_001182795.1_CBS1585 | cds-NP_014015.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:839188-842103:+ | gene-YMR288W_CBS436 | rna-NM_001182795.1_CBS436 | cds-NP_014015.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:928448-931363:+ | gene-YMR288W_CBS6412 | rna-NM_001182795.1_CBS6412 | cds-NP_014015.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:815995-818910:+ | gene-YMR288W_CBS6413 | rna-NM_001182795.1_CBS6413 | cds-NP_014015.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:840117-843032:+ | gene-YMR288W_CENPK1137D | rna-NM_001182795.1_CENPK1137D | cds-NP_014015.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:877314-880229:+ | gene-YMR288W_EthanolRed | rna-NM_001182795.1_EthanolRed | cds-NP_014015.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:823341-826256:+ | gene-YMR288W_FaliES1 | rna-NM_001182795.1_FaliES1 | cds-NP_014015.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000262.1:25478-28393:- | gene-YMR288W_JAY291 | rna-NM_001182795.1_JAY291 | cds-NP_014015.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:823657-826572:+ | gene-YMR288W_MUCL30387 | rna-NM_001182795.1_MUCL30387 | cds-NP_014015.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:833054-835969:+ | gene-YMR288W_MUCL30388 | rna-NM_001182795.1_MUCL30388 | cds-NP_014015.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:817962-820877:+ | gene-YMR288W_MUCL39482 | rna-NM_001182795.1_MUCL39482 | cds-NP_014015.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:826766-829681:+ | gene-YMR288W_MUCL42920 | rna-NM_001182795.1_MUCL42920 | cds-NP_014015.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:845525-848440:+ | gene-YMR288W_NCIM3186 | rna-NM_001182795.1_NCIM3186 | cds-NP_014015.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:817605-820520:+ | gene-YMR288W_NCYC1407 | rna-NM_001182795.1_NCYC1407 | cds-NP_014015.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:833409-836324:+ | gene-YMR288W_PE2H3 | rna-NM_001182795.1_PE2H3 | cds-NP_014015.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:829383-832298:+ | gene-YMR288W_PE2H4 | rna-NM_001182795.1_PE2H4 | cds-NP_014015.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:845571-848486:+ | gene-YMR288W_S288C | rna-NM_001182795.1_S288C | cds-NP_014015.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000036.1:23339-26254:+ | gene-YMR288W_SA1 | rna-NM_001182795.1_SA1 | cds-NP_014015.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:819510-822425:+ | gene-YMR288W_ThermosaccDry | rna-NM_001182795.1_ThermosaccDry | cds-NP_014015.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:833254-836169:+ | gene-YMR288W_VR1 | rna-NM_001182795.1_VR1 | cds-NP_014015.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:234744-237659:+ | gene-YMR288W_ZTW1 | rna-NM_001182795.1_ZTW1 | cds-NP_014015.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:838116-841031:+ | gene-YMR288W_Sparadoxus | rna-NM_001182795.1_Sparadoxus | cds-NP_014015.1_Sparadoxus | 89.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |