Gene name: HSE1
Reference locus (S288C): YHL002W
Gene biotype: protein_coding
Description: Class E vacuolar protein-sorting machinery protein HSE1; Subunit of the endosomal Vps27p-Hse1p complex; complex is required for sorting of ubiquitinated membrane proteins into intralumenal vesicles prior to vacuolar degradation, as well as for recycling of Golgi proteins and formation of lumenal membranes
Top 10 interactors (score): VPS27 (0.999); STP22 (0.994); VPS36 (0.986); UBI4 (0.986); VPS24 (0.979); VPS25 (0.974); VPS20 (0.972); VPS28 (0.972); DID4 (0.968); SNF8 (0.968); BRO1 (0.963); EFM4 (0.962); CTF18 (0.962); RPS31 (0.96); MVB12 (0.949); SNF7 (0.941); SRN2 (0.927); DOA4 (0.923); UBP7 (0.9); BBC1 (0.897)
Homologues (species, bitscore): STAM2 (Homo sapiens, 119.8); Stam2 (Mus musculus, 114.8); stam2 (Danio rerio, 108.6); stam2 (Xenopus tropicalis, 115.9); Stam (Drosophila melanogaster, 114.0); stam-1 (Caenorhabditis elegans, 113.2); AT2G38410 (Arabidopsis thaliana, 50.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:91225-92583:+ | gene-YHL002W_AKU4011 | rna-NM_001179082.1_AKU4011 | cds-NP_011861.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:10940-12298:+ | gene-YHL002W_BG1 | rna-NM_001179082.1_BG1 | cds-NP_011861.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:98082-99440:+ | gene-YHL002W_Bruggeman | rna-NM_001179082.1_Bruggeman | cds-NP_011861.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:92066-93424:+ | gene-YHL002W_CAT1 | rna-NM_001179082.1_CAT1 | cds-NP_011861.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:91812-93170:+ | gene-YHL002W_CBS1585 | rna-NM_001179082.1_CBS1585 | cds-NP_011861.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:84310-85668:+ | gene-YHL002W_CBS436 | rna-NM_001179082.1_CBS436 | cds-NP_011861.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:91411-92769:+ | gene-YHL002W_CBS6412 | rna-NM_001179082.1_CBS6412 | cds-NP_011861.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:91137-92495:+ | gene-YHL002W_CBS6413 | rna-NM_001179082.1_CBS6413 | cds-NP_011861.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:95769-97127:+ | gene-YHL002W_CENPK1137D | rna-NM_001179082.1_CENPK1137D | cds-NP_011861.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:91221-92579:+ | gene-YHL002W_EthanolRed | rna-NM_001179082.1_EthanolRed | cds-NP_011861.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:91750-93108:+ | gene-YHL002W_FaliES1 | rna-NM_001179082.1_FaliES1 | cds-NP_011861.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000422.1:864-2222:- | gene-YHL002W_JAY291 | rna-NM_001179082.1_JAY291 | cds-NP_011861.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:94822-96180:+ | gene-YHL002W_MUCL30387 | rna-NM_001179082.1_MUCL30387 | cds-NP_011861.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:96033-97391:+ | gene-YHL002W_MUCL30388 | rna-NM_001179082.1_MUCL30388 | cds-NP_011861.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:90838-92196:+ | gene-YHL002W_MUCL39482 | rna-NM_001179082.1_MUCL39482 | cds-NP_011861.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:94745-96103:+ | gene-YHL002W_MUCL42920 | rna-NM_001179082.1_MUCL42920 | cds-NP_011861.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:102494-103852:+ | gene-YHL002W_NCIM3186 | rna-NM_001179082.1_NCIM3186 | cds-NP_011861.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:90254-91612:+ | gene-YHL002W_NCYC1407 | rna-NM_001179082.1_NCYC1407 | cds-NP_011861.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:92459-93817:+ | gene-YHL002W_PE2H3 | rna-NM_001179082.1_PE2H3 | cds-NP_011861.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:99900-101258:+ | gene-YHL002W_PE2H4 | rna-NM_001179082.1_PE2H4 | cds-NP_011861.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:102612-103970:+ | gene-YHL002W_S288C | rna-NM_001179082.1_S288C | cds-NP_011861.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000075.1:42573-43931:- | gene-YHL002W_SA1 | rna-NM_001179082.1_SA1 | cds-NP_011861.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:92840-94198:+ | gene-YHL002W_ThermosaccDry | rna-NM_001179082.1_ThermosaccDry | cds-NP_011861.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:98386-99744:+ | gene-YHL002W_VR1 | rna-NM_001179082.1_VR1 | cds-NP_011861.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:84005-85363:+ | gene-YHL002W_ZTW1 | rna-NM_001179082.1_ZTW1 | cds-NP_011861.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:90509-91858:+ | gene-YHL002W_Sparadoxus | rna-NM_001179082.1_Sparadoxus | cds-NP_011861.1_Sparadoxus | 89.0 | 99.1 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |