Gene name: HRT3
Reference locus (S288C): YLR097C
Gene biotype: protein_coding
Description: F-box protein HRT3; Putative SCF-ubiquitin ligase F-box protein; based on both genetic and physical interactions and sequence similarity; identified in association with Cdc53p, Skp1p and Ubi4 in large and small-scale studies
Top 10 interactors (score): SKP1 (0.999); CDC53 (0.997); SAF1 (0.97); YDR306C (0.92); UCC1 (0.895); YLR352W (0.837); CUL3 (0.826); HRT1 (0.807); AMN1 (0.8); RAD7 (0.781); FAP1 (0.756); UFD4 (0.755); TDA2 (0.745); HUL5 (0.741); UFD2 (0.714); ROY1 (0.713); COS111 (0.712); ASI1 (0.712); ELA1 (0.675); RTT101 (0.667)
Homologues (species, bitscore): FBXO9 (Homo sapiens, 81.6); Fbxo9 (Mus musculus, 74.3); fbxo9 (Danio rerio, 74.7); fbxo9 (Xenopus tropicalis, 79.0); CG5961 (Drosophila melanogaster, 58.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:318721-319755:- | gene-YLR097C_AKU4011 | rna-NM_001181984.1_AKU4011 | cds-NP_013198.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:281917-282951:- | gene-YLR097C_BG1 | rna-NM_001181984.1_BG1 | cds-NP_013198.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:328588-329622:- | gene-YLR097C_Bruggeman | rna-NM_001181984.1_Bruggeman | cds-NP_013198.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:328932-329966:- | gene-YLR097C_CAT1 | rna-NM_001181984.1_CAT1 | cds-NP_013198.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:325865-326899:- | gene-YLR097C_CBS1585 | rna-NM_001181984.1_CBS1585 | cds-NP_013198.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:316449-317483:- | gene-YLR097C_CBS436 | rna-NM_001181984.1_CBS436 | cds-NP_013198.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:324282-325316:- | gene-YLR097C_CBS6412 | rna-NM_001181984.1_CBS6412 | cds-NP_013198.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:326131-327165:- | gene-YLR097C_CBS6413 | rna-NM_001181984.1_CBS6413 | cds-NP_013198.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:321236-322270:- | gene-YLR097C_CENPK1137D | rna-NM_001181984.1_CENPK1137D | cds-NP_013198.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:318282-319316:- | gene-YLR097C_EthanolRed | rna-NM_001181984.1_EthanolRed | cds-NP_013198.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:318098-319132:- | gene-YLR097C_FaliES1 | rna-NM_001181984.1_FaliES1 | cds-NP_013198.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:93050-94084:- | gene-YLR097C_JAY291 | rna-NM_001181984.1_JAY291 | cds-NP_013198.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:325967-327001:- | gene-YLR097C_MUCL30387 | rna-NM_001181984.1_MUCL30387 | cds-NP_013198.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:333632-334666:- | gene-YLR097C_MUCL30388 | rna-NM_001181984.1_MUCL30388 | cds-NP_013198.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:326373-327407:- | gene-YLR097C_MUCL39482 | rna-NM_001181984.1_MUCL39482 | cds-NP_013198.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:326268-327302:- | gene-YLR097C_MUCL42920 | rna-NM_001181984.1_MUCL42920 | cds-NP_013198.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:336205-337239:- | gene-YLR097C_NCIM3186 | rna-NM_001181984.1_NCIM3186 | cds-NP_013198.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:318436-319470:- | gene-YLR097C_NCYC1407 | rna-NM_001181984.1_NCYC1407 | cds-NP_013198.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:324215-325249:- | gene-YLR097C_PE2H3 | rna-NM_001181984.1_PE2H3 | cds-NP_013198.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:323956-324990:- | gene-YLR097C_PE2H4 | rna-NM_001181984.1_PE2H4 | cds-NP_013198.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:336231-337265:- | gene-YLR097C_S288C | rna-NM_001181984.1_S288C | cds-NP_013198.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000033.1:36832-37866:+ | gene-YLR097C_SA1 | rna-NM_001181984.1_SA1 | cds-NP_013198.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:318274-319308:- | gene-YLR097C_ThermosaccDry | rna-NM_001181984.1_ThermosaccDry | cds-NP_013198.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:332456-333490:- | gene-YLR097C_VR1 | rna-NM_001181984.1_VR1 | cds-NP_013198.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:317700-318734:- | gene-YLR097C_ZTW1 | rna-NM_001181984.1_ZTW1 | cds-NP_013198.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:326526-327560:- | gene-YLR097C_Sparadoxus | rna-NM_001181984.1_Sparadoxus | cds-NP_013198.1_Sparadoxus | 88.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |