Gene name: HRP1
Reference locus (S288C): YOL123W
Gene biotype: protein_coding
Description: Nuclear polyadenylated RNA-binding protein 4; Subunit of cleavage factor I; cleavage factor I is a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences; required for genome stability
Top 10 interactors (score): RNA15 (0.998); RNA14 (0.991); KAP104 (0.989); SEC4 (0.977); NPL3 (0.976); CFT1 (0.964); PAP1 (0.964); PCF11 (0.954); NAB2 (0.953); PFS2 (0.948); YTH1 (0.947); CLP1 (0.938); YSH1 (0.931); HMT1 (0.928); CFT2 (0.927); PTA1 (0.921); MPE1 (0.911); SSU72 (0.898); FIP1 (0.889); SWD2 (0.884)
Homologues (species, bitscore): MSI1 (Homo sapiens, 177.2); Msi1 (Mus musculus, 176.8); msi2b (Danio rerio, 171.0); msi1 (Xenopus tropicalis, 166.8); msi (Drosophila melanogaster, 188.7); msi-1 (Caenorhabditis elegans, 176.8); AT4G26650 (Arabidopsis thaliana, 174.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:76496-78100:+ | gene-YOL123W_AKU4011 | rna-NM_001183377.1_AKU4011 | cds-NP_014518.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000172.1:42124-43728:+ | gene-YOL123W_BG1 | rna-NM_001183377.1_BG1 | cds-NP_014518.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:77771-79375:+ | gene-YOL123W_Bruggeman | rna-NM_001183377.1_Bruggeman | cds-NP_014518.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:76734-78338:+ | gene-YOL123W_CAT1 | rna-NM_001183377.1_CAT1 | cds-NP_014518.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:70973-72577:+ | gene-YOL123W_CBS1585 | rna-NM_001183377.1_CBS1585 | cds-NP_014518.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:76828-78432:+ | gene-YOL123W_CBS436 | rna-NM_001183377.1_CBS436 | cds-NP_014518.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:70836-72440:+ | gene-YOL123W_CBS6412 | rna-NM_001183377.1_CBS6412 | cds-NP_014518.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:77304-78908:+ | gene-YOL123W_CBS6413 | rna-NM_001183377.1_CBS6413 | cds-NP_014518.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:87741-89345:+ | gene-YOL123W_CENPK1137D | rna-NM_001183377.1_CENPK1137D | cds-NP_014518.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:74747-76351:+ | gene-YOL123W_EthanolRed | rna-NM_001183377.1_EthanolRed | cds-NP_014518.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:76776-78380:+ | gene-YOL123W_FaliES1 | rna-NM_001183377.1_FaliES1 | cds-NP_014518.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000329.1:4164-5768:- | gene-YOL123W_JAY291 | rna-NM_001183377.1_JAY291 | cds-NP_014518.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:82412-84016:+ | gene-YOL123W_MUCL30387 | rna-NM_001183377.1_MUCL30387 | cds-NP_014518.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:85411-87015:+ | gene-YOL123W_MUCL30388 | rna-NM_001183377.1_MUCL30388 | cds-NP_014518.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:78911-80515:+ | gene-YOL123W_MUCL39482 | rna-NM_001183377.1_MUCL39482 | cds-NP_014518.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:94790-96394:+ | gene-YOL123W_MUCL42920 | rna-NM_001183377.1_MUCL42920 | cds-NP_014518.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:87733-89337:+ | gene-YOL123W_NCIM3186 | rna-NM_001183377.1_NCIM3186 | cds-NP_014518.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:84946-86550:+ | gene-YOL123W_NCYC1407 | rna-NM_001183377.1_NCYC1407 | cds-NP_014518.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:63383-64987:+ | gene-YOL123W_PE2H3 | rna-NM_001183377.1_PE2H3 | cds-NP_014518.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:80331-81935:+ | gene-YOL123W_PE2H4 | rna-NM_001183377.1_PE2H4 | cds-NP_014518.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:87844-89448:+ | gene-YOL123W_S288C | rna-NM_001183377.1_S288C | cds-NP_014518.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:61273-62877:+ | gene-YOL123W_SA1 | rna-NM_001183377.1_SA1 | cds-NP_014518.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:75914-77518:+ | gene-YOL123W_ThermosaccDry | rna-NM_001183377.1_ThermosaccDry | cds-NP_014518.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:76578-78182:+ | gene-YOL123W_VR1 | rna-NM_001183377.1_VR1 | cds-NP_014518.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:75666-77270:+ | gene-YOL123W_ZTW1 | rna-NM_001183377.1_ZTW1 | cds-NP_014518.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:78399-80000:+ | gene-YOL123W_Sparadoxus | rna-NM_001183377.1_Sparadoxus | cds-NP_014518.1_Sparadoxus | 93.9 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |