Gene name: HPR1
Reference locus (S288C): YDR138W
Gene biotype: protein_coding
Description: Subunit of THO/TREX complexes; this complex couple transcription elongation with mitotic recombination and with mRNA metabolism and export, subunit of an RNA Pol II complex; regulates lifespan; involved in telomere maintenance; similar to Top1p
Top 10 interactors (score): SUB2 (0.999); THO2 (0.999); THP2 (0.999); MFT1 (0.995); YRA1 (0.992); TEX1 (0.986); MEX67 (0.97); GBP2 (0.943); HRB1 (0.906); SAC3 (0.902); CDC73 (0.871); ACC1 (0.836); RNH1 (0.808); THO1 (0.807); NAB2 (0.794); STO1 (0.775); NPL3 (0.774); TOP1 (0.765); CBC2 (0.75); RAP1 (0.748)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:701513-703771:+ | gene-YDR138W_AKU4011 | rna-NM_001180445.1_AKU4011 | cds-NP_010422.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:421068-423326:- | gene-YDR138W_BG1 | rna-NM_001180445.1_BG1 | cds-NP_010422.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:733568-735826:+ | gene-YDR138W_Bruggeman | rna-NM_001180445.1_Bruggeman | cds-NP_010422.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:721540-723798:+ | gene-YDR138W_CAT1 | rna-NM_001180445.1_CAT1 | cds-NP_010422.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:692551-694809:+ | gene-YDR138W_CBS1585 | rna-NM_001180445.1_CBS1585 | cds-NP_010422.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:718454-720712:+ | gene-YDR138W_CBS436 | rna-NM_001180445.1_CBS436 | cds-NP_010422.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:688903-691161:+ | gene-YDR138W_CBS6412 | rna-NM_001180445.1_CBS6412 | cds-NP_010422.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:717879-720137:+ | gene-YDR138W_CBS6413 | rna-NM_001180445.1_CBS6413 | cds-NP_010422.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:723016-725274:+ | gene-YDR138W_CENPK1137D | rna-NM_001180445.1_CENPK1137D | cds-NP_010422.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:703276-705534:+ | gene-YDR138W_EthanolRed | rna-NM_001180445.1_EthanolRed | cds-NP_010422.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:710070-712328:+ | gene-YDR138W_FaliES1 | rna-NM_001180445.1_FaliES1 | cds-NP_010422.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000002.1:62215-64473:+ | gene-YDR138W_JAY291 | rna-NM_001180445.1_JAY291 | cds-NP_010422.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:719492-721750:+ | gene-YDR138W_MUCL30387 | rna-NM_001180445.1_MUCL30387 | cds-NP_010422.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:708511-710769:+ | gene-YDR138W_MUCL30388 | rna-NM_001180445.1_MUCL30388 | cds-NP_010422.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:693894-696152:+ | gene-YDR138W_MUCL39482 | rna-NM_001180445.1_MUCL39482 | cds-NP_010422.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:631850-634108:+ | gene-YDR138W_MUCL42920 | rna-NM_001180445.1_MUCL42920 | cds-NP_010422.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:730501-732759:+ | gene-YDR138W_NCIM3186 | rna-NM_001180445.1_NCIM3186 | cds-NP_010422.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:693295-695553:+ | gene-YDR138W_NCYC1407 | rna-NM_001180445.1_NCYC1407 | cds-NP_010422.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:712633-714891:+ | gene-YDR138W_PE2H3 | rna-NM_001180445.1_PE2H3 | cds-NP_010422.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:711938-714196:+ | gene-YDR138W_PE2H4 | rna-NM_001180445.1_PE2H4 | cds-NP_010422.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:730578-732836:+ | gene-YDR138W_S288C | rna-NM_001180445.1_S288C | cds-NP_010422.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:79249-81507:+ | gene-YDR138W_SA1 | rna-NM_001180445.1_SA1 | cds-NP_010422.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:709592-711850:+ | gene-YDR138W_ThermosaccDry | rna-NM_001180445.1_ThermosaccDry | cds-NP_010422.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:722947-725205:+ | gene-YDR138W_VR1 | rna-NM_001180445.1_VR1 | cds-NP_010422.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:707173-709431:+ | gene-YDR138W_ZTW1 | rna-NM_001180445.1_ZTW1 | cds-NP_010422.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:711743-714001:+ | gene-YDR138W_Sparadoxus | rna-NM_001180445.1_Sparadoxus | cds-NP_010422.1_Sparadoxus | 85.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |