HOP2 (YGL033W)


Gene profile

Gene name: HOP2
Reference locus (S288C): YGL033W
Gene biotype: protein_coding

Description: 26S proteasome regulatory subunit, ATPase 3, interacting protein; Homologous-pairing protein 2; Meiosis-specific protein that localizes to chromosomes; prevents synapsis between nonhomologous chromosomes and ensures synapsis between homologs; complexes with Mnd1p to promote homolog pairing and meiotic double-strand break repair; heterodimer of Hop2p-Mnd1p stimulates the Dmc1p-mediated strand invasion

Top 10 interactors (score): MND1 (0.999); DMC1 (0.987); SPO11 (0.948); MEK1 (0.921); HOP1 (0.891); SAE2 (0.85); RED1 (0.836); RAD51 (0.823); MSH4 (0.815); PCH2 (0.796); ZIP2 (0.79); ZIP1 (0.784); YMR147W (0.753); REC8 (0.699); YHR202W (0.69); NDT80 (0.684); SPO22 (0.665); PHO92 (0.656); HFM1 (0.652); MET2 (0.642)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005301.1:437677-438453:+ gene-YGL033W_AKU4011 rna-NM_001180898.2_AKU4011 cds-NP_011482.3_AKU4011 99.5 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000060.1:137679-138455:- gene-YGL033W_BG1 rna-NM_001180898.2_BG1 cds-NP_011482.3_BG1 99.5 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005509.1:438441-439217:+ gene-YGL033W_Bruggeman rna-NM_001180898.2_Bruggeman cds-NP_011482.3_Bruggeman 99.5 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005525.1:436684-437460:+ gene-YGL033W_CAT1 rna-NM_001180898.2_CAT1 cds-NP_011482.3_CAT1 99.6 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005365.1:439149-439925:+ gene-YGL033W_CBS1585 rna-NM_001180898.2_CBS1585 cds-NP_011482.3_CBS1585 99.5 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005349.1:433546-434322:+ gene-YGL033W_CBS436 rna-NM_001180898.2_CBS436 cds-NP_011482.3_CBS436 99.8 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005333.1:431752-432528:+ gene-YGL033W_CBS6412 rna-NM_001180898.2_CBS6412 cds-NP_011482.3_CBS6412 99.5 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005317.1:435818-436594:+ gene-YGL033W_CBS6413 rna-NM_001180898.2_CBS6413 cds-NP_011482.3_CBS6413 99.5 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001528.1:435464-436240:+ gene-YGL033W_CENPK1137D rna-NM_001180898.2_CENPK1137D cds-NP_011482.3_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005477.1:426020-426796:+ gene-YGL033W_EthanolRed rna-NM_001180898.2_EthanolRed cds-NP_011482.3_EthanolRed 99.3 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005541.1:429258-430034:+ gene-YGL033W_FaliES1 rna-NM_001180898.2_FaliES1 cds-NP_011482.3_FaliES1 99.3 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000234.1:1230-2006:- gene-YGL033W_JAY291 rna-NM_001180898.2_JAY291 cds-NP_011482.3_JAY291 99.6 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005413.1:435646-436422:+ gene-YGL033W_MUCL30387 rna-NM_001180898.2_MUCL30387 cds-NP_011482.3_MUCL30387 99.5 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005445.1:438444-439220:+ gene-YGL033W_MUCL30388 rna-NM_001180898.2_MUCL30388 cds-NP_011482.3_MUCL30388 99.5 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005285.1:434987-435763:+ gene-YGL033W_MUCL39482 rna-NM_001180898.2_MUCL39482 cds-NP_011482.3_MUCL39482 99.5 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005429.1:444444-445220:+ gene-YGL033W_MUCL42920 rna-NM_001180898.2_MUCL42920 cds-NP_011482.3_MUCL42920 99.6 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011816.1:435625-436401:+ gene-YGL033W_NCIM3186 rna-NM_001180898.2_NCIM3186 cds-NP_011482.3_NCIM3186 99.5 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005269.1:428996-429772:+ gene-YGL033W_NCYC1407 rna-NM_001180898.2_NCYC1407 cds-NP_011482.3_NCYC1407 99.5 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994146.1:431659-432435:+ gene-YGL033W_PE2H3 rna-NM_001180898.2_PE2H3 cds-NP_011482.3_PE2H3 99.6 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999878.1:436709-437485:+ gene-YGL033W_PE2H4 rna-NM_001180898.2_PE2H4 cds-NP_011482.3_PE2H4 99.6 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001139.9:435625-436401:+ gene-YGL033W_S288C rna-NM_001180898.2_S288C cds-NP_011482.3_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000021.1:119197-119973:- gene-YGL033W_SA1 rna-NM_001180898.2_SA1 cds-NP_011482.3_SA1 99.8 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005493.1:448624-449400:+ gene-YGL033W_ThermosaccDry rna-NM_001180898.2_ThermosaccDry cds-NP_011482.3_ThermosaccDry 99.3 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005461.1:538698-539474:+ gene-YGL033W_VR1 rna-NM_001180898.2_VR1 cds-NP_011482.3_VR1 99.5 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000014.1:427220-427996:+ gene-YGL033W_ZTW1 rna-NM_001180898.2_ZTW1 cds-NP_011482.3_ZTW1 99.5 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047493.1:436379-437158:+ gene-YGL033W_Sparadoxus rna-NM_001180898.2_Sparadoxus cds-NP_011482.3_Sparadoxus 89.7 100.0 Verified 1 1 1 False True False False False

Additional files