HMO1 (YDR174W)


Gene profile

Gene name: HMO1
Reference locus (S288C): YDR174W
Gene biotype: protein_coding

Description: Transcriptional regulator hmo1; Chromatin associated high mobility group (HMG) family member; involved in compacting, bending, bridging and looping DNA; rDNA-binding component that regulates transcription from RNA polymerase I promoters; regulates start site selection of ribosomal protein genes via RNA polymerase II promoters; role in genome maintenance; associates with a 5'-3' DNA helicase and Fpr1p, a prolyl isomerase; relocalizes to the cytosol in response to hypoxia

Top 10 interactors (score): IFH1 (0.968); UTP22 (0.957); RPA49 (0.944); UTP9 (0.934); RPS6B (0.933); NOP1 (0.925); NOP56 (0.919); KRR1 (0.917); RPS6A (0.912); RPS14B (0.912); RPS7A (0.911); BUD21 (0.91); RRP5 (0.91); NHP6A (0.907); RPS9B (0.907); RPS2 (0.905); UTP20 (0.904); MPP10 (0.904); RPS14A (0.904); UTP10 (0.904)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005298.1:780648-781388:+ gene-YDR174W_AKU4011 rna-NM_001180481.1_AKU4011 cds-NP_010459.1_AKU4011 100.0 100.0 Verified 1 1 1 True True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000080.1:344417-345157:- gene-YDR174W_BG1 rna-NM_001180481.1_BG1 cds-NP_010459.1_BG1 99.8 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005506.1:813060-813800:+ gene-YDR174W_Bruggeman rna-NM_001180481.1_Bruggeman cds-NP_010459.1_Bruggeman 99.7 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005522.1:800314-801054:+ gene-YDR174W_CAT1 rna-NM_001180481.1_CAT1 cds-NP_010459.1_CAT1 99.8 100.0 Verified 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005362.1:771015-771755:+ gene-YDR174W_CBS1585 rna-NM_001180481.1_CBS1585 cds-NP_010459.1_CBS1585 100.0 100.0 Verified 1 1 1 True True False False False
CBS436 GCA_001738355.1 Sake Asia CM005346.1:799988-800728:+ gene-YDR174W_CBS436 rna-NM_001180481.1_CBS436 cds-NP_010459.1_CBS436 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005330.1:767820-768560:+ gene-YDR174W_CBS6412 rna-NM_001180481.1_CBS6412 cds-NP_010459.1_CBS6412 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005314.1:798363-799103:+ gene-YDR174W_CBS6413 rna-NM_001180481.1_CBS6413 cds-NP_010459.1_CBS6413 100.0 100.0 Verified 1 1 1 True True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001525.1:810929-811669:+ gene-YDR174W_CENPK1137D rna-NM_001180481.1_CENPK1137D cds-NP_010459.1_CENPK1137D 99.5 100.0 Verified 1 1 1 False True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005474.1:781417-782157:+ gene-YDR174W_EthanolRed rna-NM_001180481.1_EthanolRed cds-NP_010459.1_EthanolRed 100.0 100.0 Verified 1 1 1 True True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005538.1:789629-790369:+ gene-YDR174W_FaliES1 rna-NM_001180481.1_FaliES1 cds-NP_010459.1_FaliES1 100.0 100.0 Verified 1 1 1 True True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000068.1:59005-59745:- gene-YDR174W_JAY291 rna-NM_001180481.1_JAY291 cds-NP_010459.1_JAY291 99.8 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005410.1:798706-799446:+ gene-YDR174W_MUCL30387 rna-NM_001180481.1_MUCL30387 cds-NP_010459.1_MUCL30387 99.7 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005442.1:786948-787688:+ gene-YDR174W_MUCL30388 rna-NM_001180481.1_MUCL30388 cds-NP_010459.1_MUCL30388 99.7 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005282.1:772462-773202:+ gene-YDR174W_MUCL39482 rna-NM_001180481.1_MUCL39482 cds-NP_010459.1_MUCL39482 100.0 100.0 Verified 1 1 1 True True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005426.1:711159-711899:+ gene-YDR174W_MUCL42920 rna-NM_001180481.1_MUCL42920 cds-NP_010459.1_MUCL42920 99.8 100.0 Verified 1 1 1 True True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011813.1:812033-812773:+ gene-YDR174W_NCIM3186 rna-NM_001180481.1_NCIM3186 cds-NP_010459.1_NCIM3186 99.5 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005266.1:775596-776336:+ gene-YDR174W_NCYC1407 rna-NM_001180481.1_NCYC1407 cds-NP_010459.1_NCYC1407 100.0 100.0 Verified 1 1 1 True True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994143.1:792322-793062:+ gene-YDR174W_PE2H3 rna-NM_001180481.1_PE2H3 cds-NP_010459.1_PE2H3 99.5 100.0 Verified 1 1 1 True True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999875.1:791627-792367:+ gene-YDR174W_PE2H4 rna-NM_001180481.1_PE2H4 cds-NP_010459.1_PE2H4 99.5 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001136.10:812110-812850:+ gene-YDR174W_S288C rna-NM_001180481.1_S288C cds-NP_010459.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000009.1:157833-158573:+ gene-YDR174W_SA1 rna-NM_001180481.1_SA1 cds-NP_010459.1_SA1 99.5 100.0 Verified 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005490.1:787784-788524:+ gene-YDR174W_ThermosaccDry rna-NM_001180481.1_ThermosaccDry cds-NP_010459.1_ThermosaccDry 100.0 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005458.1:803010-803750:+ gene-YDR174W_VR1 rna-NM_001180481.1_VR1 cds-NP_010459.1_VR1 99.4 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000007.1:50497-51237:+ gene-YDR174W_ZTW1 rna-NM_001180481.1_ZTW1 cds-NP_010459.1_ZTW1 100.0 100.0 Verified 1 1 1 True True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047490.1:792900-793640:+ gene-YDR174W_Sparadoxus rna-NM_001180481.1_Sparadoxus cds-NP_010459.1_Sparadoxus 93.9 100.0 Verified 1 1 1 False True False False False

Additional files