Gene name: HMO1
Reference locus (S288C): YDR174W
Gene biotype: protein_coding
Description: Transcriptional regulator hmo1; Chromatin associated high mobility group (HMG) family member; involved in compacting, bending, bridging and looping DNA; rDNA-binding component that regulates transcription from RNA polymerase I promoters; regulates start site selection of ribosomal protein genes via RNA polymerase II promoters; role in genome maintenance; associates with a 5'-3' DNA helicase and Fpr1p, a prolyl isomerase; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): IFH1 (0.968); UTP22 (0.957); RPA49 (0.944); UTP9 (0.934); RPS6B (0.933); NOP1 (0.925); NOP56 (0.919); KRR1 (0.917); RPS6A (0.912); RPS14B (0.912); RPS7A (0.911); BUD21 (0.91); RRP5 (0.91); NHP6A (0.907); RPS9B (0.907); RPS2 (0.905); UTP20 (0.904); MPP10 (0.904); RPS14A (0.904); UTP10 (0.904)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:780648-781388:+ | gene-YDR174W_AKU4011 | rna-NM_001180481.1_AKU4011 | cds-NP_010459.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:344417-345157:- | gene-YDR174W_BG1 | rna-NM_001180481.1_BG1 | cds-NP_010459.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:813060-813800:+ | gene-YDR174W_Bruggeman | rna-NM_001180481.1_Bruggeman | cds-NP_010459.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:800314-801054:+ | gene-YDR174W_CAT1 | rna-NM_001180481.1_CAT1 | cds-NP_010459.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:771015-771755:+ | gene-YDR174W_CBS1585 | rna-NM_001180481.1_CBS1585 | cds-NP_010459.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:799988-800728:+ | gene-YDR174W_CBS436 | rna-NM_001180481.1_CBS436 | cds-NP_010459.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:767820-768560:+ | gene-YDR174W_CBS6412 | rna-NM_001180481.1_CBS6412 | cds-NP_010459.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:798363-799103:+ | gene-YDR174W_CBS6413 | rna-NM_001180481.1_CBS6413 | cds-NP_010459.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:810929-811669:+ | gene-YDR174W_CENPK1137D | rna-NM_001180481.1_CENPK1137D | cds-NP_010459.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:781417-782157:+ | gene-YDR174W_EthanolRed | rna-NM_001180481.1_EthanolRed | cds-NP_010459.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:789629-790369:+ | gene-YDR174W_FaliES1 | rna-NM_001180481.1_FaliES1 | cds-NP_010459.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000068.1:59005-59745:- | gene-YDR174W_JAY291 | rna-NM_001180481.1_JAY291 | cds-NP_010459.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:798706-799446:+ | gene-YDR174W_MUCL30387 | rna-NM_001180481.1_MUCL30387 | cds-NP_010459.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:786948-787688:+ | gene-YDR174W_MUCL30388 | rna-NM_001180481.1_MUCL30388 | cds-NP_010459.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:772462-773202:+ | gene-YDR174W_MUCL39482 | rna-NM_001180481.1_MUCL39482 | cds-NP_010459.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:711159-711899:+ | gene-YDR174W_MUCL42920 | rna-NM_001180481.1_MUCL42920 | cds-NP_010459.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:812033-812773:+ | gene-YDR174W_NCIM3186 | rna-NM_001180481.1_NCIM3186 | cds-NP_010459.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:775596-776336:+ | gene-YDR174W_NCYC1407 | rna-NM_001180481.1_NCYC1407 | cds-NP_010459.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:792322-793062:+ | gene-YDR174W_PE2H3 | rna-NM_001180481.1_PE2H3 | cds-NP_010459.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:791627-792367:+ | gene-YDR174W_PE2H4 | rna-NM_001180481.1_PE2H4 | cds-NP_010459.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:812110-812850:+ | gene-YDR174W_S288C | rna-NM_001180481.1_S288C | cds-NP_010459.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:157833-158573:+ | gene-YDR174W_SA1 | rna-NM_001180481.1_SA1 | cds-NP_010459.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:787784-788524:+ | gene-YDR174W_ThermosaccDry | rna-NM_001180481.1_ThermosaccDry | cds-NP_010459.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:803010-803750:+ | gene-YDR174W_VR1 | rna-NM_001180481.1_VR1 | cds-NP_010459.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:50497-51237:+ | gene-YDR174W_ZTW1 | rna-NM_001180481.1_ZTW1 | cds-NP_010459.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:792900-793640:+ | gene-YDR174W_Sparadoxus | rna-NM_001180481.1_Sparadoxus | cds-NP_010459.1_Sparadoxus | 93.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |