Gene name: HMLALPHA2
Reference locus (S288C): YCL067C
Gene biotype: protein_coding
Description: Silenced copy of ALPHA2 at HML; homeobox-domain protein that associates with Mcm1p in haploid cells to repress a-specific gene expression and interacts with a1p in diploid cells to repress haploid-specific gene expression; Belongs to the TALE/M-ATYP homeobox family
Top 10 interactors (score): HMRA1 (0.999); MCM1 (0.997); HMLALPHA1 (0.991); HMRA2 (0.979); RME1 (0.951); MATALPHA1 (0.945); TUP1 (0.884); FYV5 (0.836); DEG1 (0.82); SLX8 (0.805); MATALPHA2 (0.802); STE2 (0.796); STE6 (0.78); SSM4 (0.78); MDR1 (0.78); CYC8 (0.754); IME1 (0.747); STE3 (0.726); SIR2 (0.714); SIR4 (0.714)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:288127-288718:- | gene-YCL067C_AKU4011 | rna-NM_001178708.1_AKU4011 | cds-NP_009866.1_AKU4011 | 56.3 | 93.5 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:47503-48135:- | gene-YCL067C_BG1 | rna-NM_001178708.1_BG1 | cds-NP_009866.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:284936-285527:- | gene-YCL067C_Bruggeman | rna-NM_001178708.1_Bruggeman | cds-NP_009866.1_Bruggeman | 71.4 | 93.5 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:294920-295511:- | gene-YCL067C_CAT1 | rna-NM_001178708.1_CAT1 | cds-NP_009866.1_CAT1 | 71.7 | 93.5 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:282874-283465:- | gene-YCL067C_CBS1585 | rna-NM_001178708.1_CBS1585 | cds-NP_009866.1_CBS1585 | 56.3 | 93.5 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:294252-294868:- | gene-YCL067C_CBS436 | rna-NM_001178708.1_CBS436 | cds-NP_009866.1_CBS436 | 57.4 | 96.5 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:274024-274615:- | gene-YCL067C_CBS6412 | rna-NM_001178708.1_CBS6412 | cds-NP_009866.1_CBS6412 | 56.3 | 93.5 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:283773-284364:- | gene-YCL067C_EthanolRed | rna-NM_001178708.1_EthanolRed | cds-NP_009866.1_EthanolRed | 56.3 | 93.5 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000278.1:1-109:- | gene-YCL067C_JAY291 | rna-NM_001178708.1_JAY291 | cds-NP_009866.1_JAY291 | 17.2 | 17.2 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000159.1:1083-1396:+ | gene-YCL067C_MUCL42920 | rna-NM_001178708.1_MUCL42920 | cds-NP_009866.1_MUCL42920 | 49.6 | 49.6 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:199178-199810:- | gene-YCL067C_NCIM3186 | rna-NM_001178708.1_NCIM3186 | cds-NP_009866.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:196125-196756:- | gene-YCL067C_NCYC1407 | rna-NM_001178708.1_NCYC1407 | cds-NP_009866.1_NCYC1407 | 79.4 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:12797-13429:- | gene-YCL067C_PE2H3 | rna-NM_001178708.1_PE2H3 | cds-NP_009866.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:12386-13018:- | gene-YCL067C_S288C | rna-NM_001178708.1_S288C | cds-NP_009866.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000044.1:1-91:- | gene-YCL067C_SA1 | rna-NM_001178708.1_SA1 | cds-NP_009866.1_SA1 | 14.3 | 14.3 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:13125-13438:- | gene-YCL067C_ThermosaccDry | rna-NM_001178708.1_ThermosaccDry | cds-NP_009866.1_ThermosaccDry | 49.6 | 49.6 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:299972-300563:- | gene-YCL067C_VR1 | rna-NM_001178708.1_VR1 | cds-NP_009866.1_VR1 | 71.7 | 93.5 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:12670-13302:- | gene-YCL067C_ZTW1 | rna-NM_001178708.1_ZTW1 | cds-NP_009866.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:227069-227701:- | gene-YCL067C_Sparadoxus | rna-NM_001178708.1_Sparadoxus | cds-NP_009866.1_Sparadoxus | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |