HMLALPHA1 (YCL066W)

Gene profile

Gene name: HMLALPHA1
Reference locus (S288C): YCL066W
Gene biotype: protein_coding

Description: Transcriptional co-activator mating type protein alpha; Silenced copy of ALPHA1 at HML; ALPHA1 encodes a transcriptional coactivator involved in the regulation of mating-type alpha-specific gene expression

Top 10 interactors (score): HMLALPHA2 (0.991); STE3 (0.971); MF(ALPHA)1 (0.971); MCM1 (0.957); MATALPHA2 (0.945); HMRA1 (0.909); MF(ALPHA)2 (0.901); STE12 (0.895); SAG1 (0.873); YCR041W (0.872); HMRA2 (0.796); STE2 (0.749); DIG1 (0.732); AFB1 (0.728); YKL177W (0.702); SIR4 (0.697); YCR097W-A (0.697); TAF2 (0.695); RME1 (0.69); MFA1 (0.676)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
BG1 GCA_001932575.1 Bioethanol South America MSHP01000049.1:1-494:- gene-YCL066W_BG1 rna-NM_001178707.1_BG1 cds-NP_009867.1_BG1 92.8 93.5 Verified 1 1 0 False False False True False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005505.1:190209-190736:+ gene-YCL066W_Bruggeman rna-NM_001178707.1_Bruggeman cds-NP_009867.1_Bruggeman 99.2 100.0 Verified 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005329.1:2971-3498:+ gene-YCL066W_CBS6412 rna-NM_001178707.1_CBS6412 cds-NP_009867.1_CBS6412 99.2 100.0 Mismatch 1 1 1 False True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005473.1:12805-13332:+ gene-YCL066W_EthanolRed rna-NM_001178707.1_EthanolRed cds-NP_009867.1_EthanolRed 99.4 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000278.1:373-815:+ gene-YCL066W_JAY291 rna-NM_001178707.1_JAY291 cds-NP_009867.1_JAY291 83.9 83.9 Verified 1 1 0 False False False True False
MUCL30387 GCA_001738515.1 Bread Europe CM005409.1:187448-187975:+ gene-YCL066W_MUCL30387 rna-NM_001178707.1_MUCL30387 cds-NP_009867.1_MUCL30387 99.2 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005441.1:187239-187766:+ gene-YCL066W_MUCL30388 rna-NM_001178707.1_MUCL30388 cds-NP_009867.1_MUCL30388 99.2 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011812.1:12914-13441:+ gene-YCL066W_NCIM3186 rna-NM_001178707.1_NCIM3186 cds-NP_009867.1_NCIM3186 70.6 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005265.1:197020-197547:+ gene-YCL066W_NCYC1407 rna-NM_001178707.1_NCYC1407 cds-NP_009867.1_NCYC1407 99.4 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994142.1:13693-14220:+ gene-YCL066W_PE2H3 rna-NM_001178707.1_PE2H3 cds-NP_009867.1_PE2H3 99.2 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001135.5:13282-13809:+ gene-YCL066W_S288C rna-NM_001178707.1_S288C cds-NP_009867.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005489.1:13702-14229:+ gene-YCL066W_ThermosaccDry rna-NM_001178707.1_ThermosaccDry cds-NP_009867.1_ThermosaccDry 99.4 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000004.1:13566-14093:+ gene-YCL066W_ZTW1 rna-NM_001178707.1_ZTW1 cds-NP_009867.1_ZTW1 99.2 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047489.1:43683-44210:+ gene-YCL066W_Sparadoxus rna-NM_001178707.1_Sparadoxus cds-NP_009867.1_Sparadoxus 91.0 100.0 Verified 1 1 1 False True False False False

Additional files