Gene name: HIT1
Reference locus (S288C): YJR055W
Gene biotype: protein_coding
Description: Protein involved in C/D snoRNP assembly; regulates abundance of Rsa1p; required for growth at high temperature; similar to human ZNHIT3
Top 10 interactors (score): RSA1 (0.947); YJR056C (0.937); FMP33 (0.919); YJL028W (0.919); YJL022W (0.919); YJL027C (0.919); VTH2 (0.771); FIP1 (0.749); REE1 (0.747); SOR1 (0.714); SNU13 (0.635); URA2 (0.61); TIM17 (0.573); RPB4 (0.572); VPS35 (0.572); NOP1 (0.441)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:510123-510617:+ | gene-YJR055W_AKU4011 | rna-NM_001181713.1_AKU4011 | cds-NP_012589.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:102374-102868:- | gene-YJR055W_BG1 | rna-NM_001181713.1_BG1 | cds-NP_012589.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:524171-524665:+ | gene-YJR055W_Bruggeman | rna-NM_001181713.1_Bruggeman | cds-NP_012589.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:528338-528832:+ | gene-YJR055W_CAT1 | rna-NM_001181713.1_CAT1 | cds-NP_012589.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:522192-522686:+ | gene-YJR055W_CBS1585 | rna-NM_001181713.1_CBS1585 | cds-NP_012589.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:540901-541395:+ | gene-YJR055W_CBS436 | rna-NM_001181713.1_CBS436 | cds-NP_012589.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:509907-510401:+ | gene-YJR055W_CBS6412 | rna-NM_001181713.1_CBS6412 | cds-NP_012589.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:512150-512644:+ | gene-YJR055W_CBS6413 | rna-NM_001181713.1_CBS6413 | cds-NP_012589.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:520798-521292:+ | gene-YJR055W_CENPK1137D | rna-NM_001181713.1_CENPK1137D | cds-NP_012589.1_CENPK1137D | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:515035-515529:+ | gene-YJR055W_EthanolRed | rna-NM_001181713.1_EthanolRed | cds-NP_012589.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:526501-526995:+ | gene-YJR055W_FaliES1 | rna-NM_001181713.1_FaliES1 | cds-NP_012589.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000352.1:1676-2170:- | gene-YJR055W_JAY291 | rna-NM_001181713.1_JAY291 | cds-NP_012589.1_JAY291 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:524708-525202:+ | gene-YJR055W_MUCL30387 | rna-NM_001181713.1_MUCL30387 | cds-NP_012589.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:521983-522477:+ | gene-YJR055W_MUCL30388 | rna-NM_001181713.1_MUCL30388 | cds-NP_012589.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:515649-516143:+ | gene-YJR055W_MUCL39482 | rna-NM_001181713.1_MUCL39482 | cds-NP_012589.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:520419-520913:+ | gene-YJR055W_MUCL42920 | rna-NM_001181713.1_MUCL42920 | cds-NP_012589.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:538751-539245:+ | gene-YJR055W_NCIM3186 | rna-NM_001181713.1_NCIM3186 | cds-NP_012589.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:513505-513999:+ | gene-YJR055W_NCYC1407 | rna-NM_001181713.1_NCYC1407 | cds-NP_012589.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:531403-531897:+ | gene-YJR055W_PE2H3 | rna-NM_001181713.1_PE2H3 | cds-NP_012589.1_PE2H3 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:525099-525593:+ | gene-YJR055W_PE2H4 | rna-NM_001181713.1_PE2H4 | cds-NP_012589.1_PE2H4 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:538772-539266:+ | gene-YJR055W_S288C | rna-NM_001181713.1_S288C | cds-NP_012589.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000110.1:20002-20496:+ | gene-YJR055W_SA1 | rna-NM_001181713.1_SA1 | cds-NP_012589.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:520431-520925:+ | gene-YJR055W_ThermosaccDry | rna-NM_001181713.1_ThermosaccDry | cds-NP_012589.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:522436-522930:+ | gene-YJR055W_VR1 | rna-NM_001181713.1_VR1 | cds-NP_012589.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:499822-500316:+ | gene-YJR055W_ZTW1 | rna-NM_001181713.1_ZTW1 | cds-NP_012589.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:532035-532529:+ | gene-YJR055W_Sparadoxus | rna-NM_001181713.1_Sparadoxus | cds-NP_012589.1_Sparadoxus | 85.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |