Gene name: HIR3
Reference locus (S288C): YJR140C
Gene biotype: protein_coding
Description: Histone transcription regulator 3; Subunit of the HIR complex; a nucleosome assembly complex involved in regulation of histone gene transcription; involved in position-dependent gene silencing and nucleosome reassembly; ortholog of human CABIN1 protein
Top 10 interactors (score): ASF1 (0.999); HPC2 (0.999); HIR2 (0.999); HIR1 (0.999); CAC2 (0.944); RTT106 (0.93); MSI1 (0.898); HHT1 (0.856); RLF2 (0.85); SPT10 (0.833); SPT2 (0.802); HHT2 (0.785); RAD53 (0.773); CDC73 (0.764); HTA1 (0.752); SPT21 (0.745); AMN1 (0.725); HTB1 (0.715); PUF3 (0.669); TAF4 (0.662)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:662248-667194:- | gene-YJR140C_AKU4011 | rna-NM_001181798.1_AKU4011 | cds-NP_012674.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000076.1:6408-11354:+ | gene-YJR140C_BG1 | rna-NM_001181798.1_BG1 | cds-NP_012674.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:677980-682926:- | gene-YJR140C_Bruggeman | rna-NM_001181798.1_Bruggeman | cds-NP_012674.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:682615-687561:- | gene-YJR140C_CAT1 | rna-NM_001181798.1_CAT1 | cds-NP_012674.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:674292-679238:- | gene-YJR140C_CBS1585 | rna-NM_001181798.1_CBS1585 | cds-NP_012674.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:693162-698108:- | gene-YJR140C_CBS436 | rna-NM_001181798.1_CBS436 | cds-NP_012674.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:661067-666013:- | gene-YJR140C_CBS6412 | rna-NM_001181798.1_CBS6412 | cds-NP_012674.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:663726-668672:- | gene-YJR140C_CBS6413 | rna-NM_001181798.1_CBS6413 | cds-NP_012674.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:673110-678056:- | gene-YJR140C_CENPK1137D | rna-NM_001181798.1_CENPK1137D | cds-NP_012674.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:666669-671615:- | gene-YJR140C_EthanolRed | rna-NM_001181798.1_EthanolRed | cds-NP_012674.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:678132-683078:- | gene-YJR140C_FaliES1 | rna-NM_001181798.1_FaliES1 | cds-NP_012674.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:6080-11027:+ | gene-YJR140C_JAY291 | rna-NM_001181798.1_JAY291 | cds-NP_012674.1_JAY291 | 99.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:677007-681953:- | gene-YJR140C_MUCL30387 | rna-NM_001181798.1_MUCL30387 | cds-NP_012674.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:674493-679439:- | gene-YJR140C_MUCL30388 | rna-NM_001181798.1_MUCL30388 | cds-NP_012674.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:667777-672723:- | gene-YJR140C_MUCL39482 | rna-NM_001181798.1_MUCL39482 | cds-NP_012674.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:672512-677458:- | gene-YJR140C_MUCL42920 | rna-NM_001181798.1_MUCL42920 | cds-NP_012674.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:690729-695675:- | gene-YJR140C_NCIM3186 | rna-NM_001181798.1_NCIM3186 | cds-NP_012674.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:665324-670270:- | gene-YJR140C_NCYC1407 | rna-NM_001181798.1_NCYC1407 | cds-NP_012674.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:683514-688460:- | gene-YJR140C_PE2H3 | rna-NM_001181798.1_PE2H3 | cds-NP_012674.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:677203-682149:- | gene-YJR140C_PE2H4 | rna-NM_001181798.1_PE2H4 | cds-NP_012674.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:690750-695696:- | gene-YJR140C_S288C | rna-NM_001181798.1_S288C | cds-NP_012674.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000069.1:6433-11379:+ | gene-YJR140C_SA1 | rna-NM_001181798.1_SA1 | cds-NP_012674.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:672063-677009:- | gene-YJR140C_ThermosaccDry | rna-NM_001181798.1_ThermosaccDry | cds-NP_012674.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:674434-679380:- | gene-YJR140C_VR1 | rna-NM_001181798.1_VR1 | cds-NP_012674.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:651412-656358:- | gene-YJR140C_ZTW1 | rna-NM_001181798.1_ZTW1 | cds-NP_012674.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:685706-690652:- | gene-YJR140C_Sparadoxus | rna-NM_001181798.1_Sparadoxus | cds-NP_012674.1_Sparadoxus | 89.8 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |