Gene name: HIR2
Reference locus (S288C): YOR038C
Gene biotype: protein_coding
Description: Protein HIR2; Subunit of HIR nucleosome assembly complex; involved in regulation of histone gene transcription; recruits Swi-Snf complexes to histone gene promoters; promotes heterochromatic gene silencing with Asf1p; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): HPC2 (0.999); HIR3 (0.999); ASF1 (0.999); HIR1 (0.996); CAC2 (0.979); MSI1 (0.975); RTT106 (0.971); RLF2 (0.936); HHT1 (0.932); SPT10 (0.898); HHT2 (0.884); HTA1 (0.864); HHF1 (0.861); SPT16 (0.853); SNF5 (0.851); SPT21 (0.844); HTB1 (0.829); DBP3 (0.815); SPT6 (0.805); SPT2 (0.799)
Homologues (species, bitscore): HIRA (Homo sapiens, 89.7); Hira (Mus musculus, 86.7); hira (Danio rerio, 86.7); hira (Xenopus tropicalis, 104.8); Hira (Drosophila melanogaster, 67.8); HIRA (Arabidopsis thaliana, 107.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:387102-389729:- | gene-YOR038C_AKU4011 | rna-NM_001183457.1_AKU4011 | cds-NP_014681.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:202678-205305:- | gene-YOR038C_BG1 | rna-NM_001183457.1_BG1 | cds-NP_014681.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:389843-392470:- | gene-YOR038C_Bruggeman | rna-NM_001183457.1_Bruggeman | cds-NP_014681.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:387996-390623:- | gene-YOR038C_CAT1 | rna-NM_001183457.1_CAT1 | cds-NP_014681.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:381793-384420:- | gene-YOR038C_CBS1585 | rna-NM_001183457.1_CBS1585 | cds-NP_014681.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:386147-388774:- | gene-YOR038C_CBS436 | rna-NM_001183457.1_CBS436 | cds-NP_014681.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:381147-383774:- | gene-YOR038C_CBS6412 | rna-NM_001183457.1_CBS6412 | cds-NP_014681.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:388522-391149:- | gene-YOR038C_CBS6413 | rna-NM_001183457.1_CBS6413 | cds-NP_014681.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:402760-405387:- | gene-YOR038C_CENPK1137D | rna-NM_001183457.1_CENPK1137D | cds-NP_014681.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:383800-386427:- | gene-YOR038C_EthanolRed | rna-NM_001183457.1_EthanolRed | cds-NP_014681.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:387148-389775:- | gene-YOR038C_FaliES1 | rna-NM_001183457.1_FaliES1 | cds-NP_014681.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000035.1:57795-60422:- | gene-YOR038C_JAY291 | rna-NM_001183457.1_JAY291 | cds-NP_014681.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:394611-397238:- | gene-YOR038C_MUCL30387 | rna-NM_001183457.1_MUCL30387 | cds-NP_014681.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:397915-400542:- | gene-YOR038C_MUCL30388 | rna-NM_001183457.1_MUCL30388 | cds-NP_014681.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:389276-391903:- | gene-YOR038C_MUCL39482 | rna-NM_001183457.1_MUCL39482 | cds-NP_014681.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:404090-406717:- | gene-YOR038C_MUCL42920 | rna-NM_001183457.1_MUCL42920 | cds-NP_014681.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:402650-405277:- | gene-YOR038C_NCIM3186 | rna-NM_001183457.1_NCIM3186 | cds-NP_014681.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:395978-398605:- | gene-YOR038C_NCYC1407 | rna-NM_001183457.1_NCYC1407 | cds-NP_014681.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:394814-397441:- | gene-YOR038C_PE2H3 | rna-NM_001183457.1_PE2H3 | cds-NP_014681.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:405195-407822:- | gene-YOR038C_PE2H4 | rna-NM_001183457.1_PE2H4 | cds-NP_014681.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:402761-405388:- | gene-YOR038C_S288C | rna-NM_001183457.1_S288C | cds-NP_014681.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:370679-373306:- | gene-YOR038C_SA1 | rna-NM_001183457.1_SA1 | cds-NP_014681.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:385688-388315:- | gene-YOR038C_ThermosaccDry | rna-NM_001183457.1_ThermosaccDry | cds-NP_014681.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:386577-389204:- | gene-YOR038C_VR1 | rna-NM_001183457.1_VR1 | cds-NP_014681.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:120314-122941:- | gene-YOR038C_ZTW1 | rna-NM_001183457.1_ZTW1 | cds-NP_014681.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:393030-395657:- | gene-YOR038C_Sparadoxus | rna-NM_001183457.1_Sparadoxus | cds-NP_014681.1_Sparadoxus | 91.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |