Gene name: HHT1
Reference locus (S288C): YBR010W
Gene biotype: protein_coding
Description: Histone H3; core histone protein required for chromatin assembly, part of heterochromatin-mediated telomeric and HM silencing; one of two identical histone H3 proteins (see HHT2); regulated by acetylation, methylation, and phosphorylation; H3K14 acetylation plays an important role in the unfolding of strongly positioned nucleosomes during repair of UV damage
Top 10 interactors (score): GCN5 (0.999); HTA1 (0.999); HTB1 (0.999); SIR3 (0.999); HHT2 (0.999); HHF2 (0.999); HHF1 (0.999); HTZ1 (0.999); HTB2 (0.999); SPT16 (0.999); RTT109 (0.999); HTA2 (0.999); ASF1 (0.999); CHD1 (0.998); SET2 (0.998); RTT106 (0.998); SET1 (0.997); POB3 (0.997); VPS75 (0.996); DOT1 (0.996)
Homologues (species, bitscore): H3F3B (Homo sapiens, 250.8); H3f3b (Mus musculus, 250.8); H3f3c (Danio rerio, 250.8); H3-3a (Xenopus tropicalis, 250.8); His3.3A (Drosophila melanogaster, 250.8); his-71 (Caenorhabditis elegans, 250.0); HTR2 (Arabidopsis thaliana, 245.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:244719-245129:+ | gene-YBR010W_AKU4011 | rna-NM_001178358.1_AKU4011 | cds-NP_009564.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:234826-235236:+ | gene-YBR010W_BG1 | rna-NM_001178358.1_BG1 | cds-NP_009564.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:245427-245837:+ | gene-YBR010W_Bruggeman | rna-NM_001178358.1_Bruggeman | cds-NP_009564.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:247704-248114:+ | gene-YBR010W_CAT1 | rna-NM_001178358.1_CAT1 | cds-NP_009564.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:236756-237166:+ | gene-YBR010W_CBS1585 | rna-NM_001178358.1_CBS1585 | cds-NP_009564.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:244998-245408:+ | gene-YBR010W_CBS436 | rna-NM_001178358.1_CBS436 | cds-NP_009564.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:335257-335667:+ | gene-YBR010W_CBS6412 | rna-NM_001178358.1_CBS6412 | cds-NP_009564.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:242121-242531:+ | gene-YBR010W_CBS6413 | rna-NM_001178358.1_CBS6413 | cds-NP_009564.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:256018-256428:+ | gene-YBR010W_CENPK1137D | rna-NM_001178358.1_CENPK1137D | cds-NP_009564.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:371716-372126:+ | gene-YBR010W_EthanolRed | rna-NM_001178358.1_EthanolRed | cds-NP_009564.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:259813-260223:+ | gene-YBR010W_FaliES1 | rna-NM_001178358.1_FaliES1 | cds-NP_009564.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000048.1:37379-37789:- | gene-YBR010W_JAY291 | rna-NM_001178358.1_JAY291 | cds-NP_009564.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:245778-246188:+ | gene-YBR010W_MUCL30387 | rna-NM_001178358.1_MUCL30387 | cds-NP_009564.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:246278-246688:+ | gene-YBR010W_MUCL30388 | rna-NM_001178358.1_MUCL30388 | cds-NP_009564.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:236738-237148:+ | gene-YBR010W_MUCL39482 | rna-NM_001178358.1_MUCL39482 | cds-NP_009564.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:244180-244590:+ | gene-YBR010W_MUCL42920 | rna-NM_001178358.1_MUCL42920 | cds-NP_009564.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:256128-256538:+ | gene-YBR010W_NCIM3186 | rna-NM_001178358.1_NCIM3186 | cds-NP_009564.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:237914-238324:+ | gene-YBR010W_NCYC1407 | rna-NM_001178358.1_NCYC1407 | cds-NP_009564.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:250071-250481:+ | gene-YBR010W_PE2H3 | rna-NM_001178358.1_PE2H3 | cds-NP_009564.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:247739-248149:+ | gene-YBR010W_PE2H4 | rna-NM_001178358.1_PE2H4 | cds-NP_009564.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:256331-256741:+ | gene-YBR010W_S288C | rna-NM_001178358.1_S288C | cds-NP_009564.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000037.1:46031-46441:- | gene-YBR010W_SA1 | rna-NM_001178358.1_SA1 | cds-NP_009564.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:259522-259932:+ | gene-YBR010W_ThermosaccDry | rna-NM_001178358.1_ThermosaccDry | cds-NP_009564.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:241417-241827:+ | gene-YBR010W_VR1 | rna-NM_001178358.1_VR1 | cds-NP_009564.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:235507-235917:+ | gene-YBR010W_ZTW1 | rna-NM_001178358.1_ZTW1 | cds-NP_009564.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:271338-271748:+ | gene-YBR010W_Sparadoxus | rna-NM_001178358.1_Sparadoxus | cds-NP_009564.1_Sparadoxus | 94.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |