Gene name: HHF1
Reference locus (S288C): YBR009C
Gene biotype: protein_coding
Description: Histone H4; core histone protein required for chromatin assembly and chromosome function; one of two identical histone proteins (see also HHF2); contributes to telomeric silencing; N-terminal domain involved in maintaining genomic integrity
Top 10 interactors (score): HAT1 (0.999); SPT16 (0.999); ASF1 (0.999); HTB2 (0.999); HTZ1 (0.999); HHT2 (0.999); POB3 (0.999); HTA1 (0.999); HAT2 (0.999); HHT1 (0.999); CSE4 (0.999); GCN5 (0.999); SIR3 (0.999); HTA2 (0.999); HTB1 (0.999); ESA1 (0.997); HHF2 (0.997); SIR2 (0.996); DOT1 (0.995); SET2 (0.993)
Homologues (species, bitscore): HIST1H4F (Homo sapiens, 193.7); Hist1h4j (Mus musculus, 193.7); Si:dkey-261m9.17 (Danio rerio, 193.7); ENSXETP00000001377 (Xenopus tropicalis, 193.7); FBpp0091114 (Drosophila melanogaster, 193.4); his-46 (Caenorhabditis elegans, 192.2); AT1G07660.1 (Arabidopsis thaliana, 192.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:243761-244072:- | gene-YBR009C_AKU4011 | rna-NM_001178357.1_AKU4011 | cds-NP_009563.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:233867-234178:- | gene-YBR009C_BG1 | rna-NM_001178357.1_BG1 | cds-NP_009563.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:244469-244780:- | gene-YBR009C_Bruggeman | rna-NM_001178357.1_Bruggeman | cds-NP_009563.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:246745-247056:- | gene-YBR009C_CAT1 | rna-NM_001178357.1_CAT1 | cds-NP_009563.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:235798-236109:- | gene-YBR009C_CBS1585 | rna-NM_001178357.1_CBS1585 | cds-NP_009563.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:244040-244351:- | gene-YBR009C_CBS436 | rna-NM_001178357.1_CBS436 | cds-NP_009563.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:334299-334610:- | gene-YBR009C_CBS6412 | rna-NM_001178357.1_CBS6412 | cds-NP_009563.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:241163-241474:- | gene-YBR009C_CBS6413 | rna-NM_001178357.1_CBS6413 | cds-NP_009563.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:255059-255370:- | gene-YBR009C_CENPK1137D | rna-NM_001178357.1_CENPK1137D | cds-NP_009563.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:370758-371069:- | gene-YBR009C_EthanolRed | rna-NM_001178357.1_EthanolRed | cds-NP_009563.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:258855-259166:- | gene-YBR009C_FaliES1 | rna-NM_001178357.1_FaliES1 | cds-NP_009563.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000048.1:38437-38748:+ | gene-YBR009C_JAY291 | rna-NM_001178357.1_JAY291 | cds-NP_009563.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:244820-245131:- | gene-YBR009C_MUCL30387 | rna-NM_001178357.1_MUCL30387 | cds-NP_009563.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:245320-245631:- | gene-YBR009C_MUCL30388 | rna-NM_001178357.1_MUCL30388 | cds-NP_009563.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:235780-236091:- | gene-YBR009C_MUCL39482 | rna-NM_001178357.1_MUCL39482 | cds-NP_009563.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:243222-243533:- | gene-YBR009C_MUCL42920 | rna-NM_001178357.1_MUCL42920 | cds-NP_009563.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:255170-255481:- | gene-YBR009C_NCIM3186 | rna-NM_001178357.1_NCIM3186 | cds-NP_009563.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:236956-237267:- | gene-YBR009C_NCYC1407 | rna-NM_001178357.1_NCYC1407 | cds-NP_009563.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:249112-249423:- | gene-YBR009C_PE2H3 | rna-NM_001178357.1_PE2H3 | cds-NP_009563.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:246781-247092:- | gene-YBR009C_PE2H4 | rna-NM_001178357.1_PE2H4 | cds-NP_009563.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:255373-255684:- | gene-YBR009C_S288C | rna-NM_001178357.1_S288C | cds-NP_009563.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000037.1:47088-47399:+ | gene-YBR009C_SA1 | rna-NM_001178357.1_SA1 | cds-NP_009563.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:258564-258875:- | gene-YBR009C_ThermosaccDry | rna-NM_001178357.1_ThermosaccDry | cds-NP_009563.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:240458-240769:- | gene-YBR009C_VR1 | rna-NM_001178357.1_VR1 | cds-NP_009563.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:234548-234859:- | gene-YBR009C_ZTW1 | rna-NM_001178357.1_ZTW1 | cds-NP_009563.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:270379-270690:- | gene-YBR009C_Sparadoxus | rna-NM_001178357.1_Sparadoxus | cds-NP_009563.1_Sparadoxus | 95.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |