Gene name: HGH1
Reference locus (S288C): YGR187C
Gene biotype: protein_coding
Description: Nonessential protein of unknown function; predicted to be involved in ribosome biogenesis; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; similar to mammalian BRP16 (Brain protein 16); relative distribution to the nucleus increases upon DNA replication stress
Top 10 interactors (score): CNS1 (0.998); NOP4 (0.984); IMP4 (0.971); YTM1 (0.958); SSF1 (0.946); DBP3 (0.94); UTP5 (0.932); RRB1 (0.93); PUF6 (0.929); PWP1 (0.926); CIC1 (0.917); SYO1 (0.915); RRS1 (0.914); NOP15 (0.898); RRT14 (0.897); MRT4 (0.896); YPL225W (0.893); NOB1 (0.882); RPF2 (0.88); BMT5 (0.871)
Homologues (species, bitscore): HGH1 (Homo sapiens, 134.4); Fam203a (Mus musculus, 116.3); fam203a (Danio rerio, 109.8); CG6073 (Drosophila melanogaster, 85.1); Y54H5A.2 (Caenorhabditis elegans, 64.3); AT1G14300 (Arabidopsis thaliana, 62.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:837986-839170:- | gene-YGR187C_AKU4011 | rna-NM_001181316.3_AKU4011 | cds-NP_011703.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:116095-117279:- | gene-YGR187C_BG1 | rna-NM_001181316.3_BG1 | cds-NP_011703.3_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:843914-845098:- | gene-YGR187C_Bruggeman | rna-NM_001181316.3_Bruggeman | cds-NP_011703.3_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:840014-841198:- | gene-YGR187C_CAT1 | rna-NM_001181316.3_CAT1 | cds-NP_011703.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:838702-839886:- | gene-YGR187C_CBS1585 | rna-NM_001181316.3_CBS1585 | cds-NP_011703.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:842592-843776:- | gene-YGR187C_CBS436 | rna-NM_001181316.3_CBS436 | cds-NP_011703.3_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:830072-831256:- | gene-YGR187C_CBS6412 | rna-NM_001181316.3_CBS6412 | cds-NP_011703.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:835568-836752:- | gene-YGR187C_CBS6413 | rna-NM_001181316.3_CBS6413 | cds-NP_011703.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:869957-871141:- | gene-YGR187C_CENPK1137D | rna-NM_001181316.3_CENPK1137D | cds-NP_011703.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:824577-825761:- | gene-YGR187C_EthanolRed | rna-NM_001181316.3_EthanolRed | cds-NP_011703.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:828968-830152:- | gene-YGR187C_FaliES1 | rna-NM_001181316.3_FaliES1 | cds-NP_011703.3_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000364.1:4634-5818:+ | gene-YGR187C_JAY291 | rna-NM_001181316.3_JAY291 | cds-NP_011703.3_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:841404-842588:- | gene-YGR187C_MUCL30387 | rna-NM_001181316.3_MUCL30387 | cds-NP_011703.3_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:841115-842299:- | gene-YGR187C_MUCL30388 | rna-NM_001181316.3_MUCL30388 | cds-NP_011703.3_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:834275-835459:- | gene-YGR187C_MUCL39482 | rna-NM_001181316.3_MUCL39482 | cds-NP_011703.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:850894-852078:- | gene-YGR187C_MUCL42920 | rna-NM_001181316.3_MUCL42920 | cds-NP_011703.3_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:870232-871416:- | gene-YGR187C_NCIM3186 | rna-NM_001181316.3_NCIM3186 | cds-NP_011703.3_NCIM3186 | 96.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:829385-830569:- | gene-YGR187C_NCYC1407 | rna-NM_001181316.3_NCYC1407 | cds-NP_011703.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:848579-849763:- | gene-YGR187C_PE2H3 | rna-NM_001181316.3_PE2H3 | cds-NP_011703.3_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:853689-854873:- | gene-YGR187C_PE2H4 | rna-NM_001181316.3_PE2H4 | cds-NP_011703.3_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:870232-871416:- | gene-YGR187C_S288C | rna-NM_001181316.3_S288C | cds-NP_011703.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000035.1:93950-95134:- | gene-YGR187C_SA1 | rna-NM_001181316.3_SA1 | cds-NP_011703.3_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:849479-850663:- | gene-YGR187C_ThermosaccDry | rna-NM_001181316.3_ThermosaccDry | cds-NP_011703.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:953724-954908:- | gene-YGR187C_VR1 | rna-NM_001181316.3_VR1 | cds-NP_011703.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:150914-152098:- | gene-YGR187C_ZTW1 | rna-NM_001181316.3_ZTW1 | cds-NP_011703.3_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:841091-842278:- | gene-YGR187C_Sparadoxus | rna-NM_001181316.3_Sparadoxus | cds-NP_011703.3_Sparadoxus | 89.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |