Gene name: HER2
Reference locus (S288C): YMR293C
Gene biotype: protein_coding
Description: Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex; involved in the formation of Q-tRNAQ; required for remodeling of ER caused by Hmg2p overexpression; similar to bacterial GatA glutamyl-tRNA amidotransferase
Top 10 interactors (score): PET112 (0.999); GTF1 (0.998); SLM5 (0.982); GLN4 (0.965); DED81 (0.944); MSE1 (0.896); GUS1 (0.891); HER1 (0.815); MSD1 (0.808); YNR021W (0.748); RRG7 (0.745); RRG8 (0.717); GEP5 (0.714); YDR114C (0.712); PCA1 (0.712); RRG9 (0.7); MSW1 (0.692); HSC82 (0.684); ISM1 (0.681); CDC5 (0.679)
Homologues (species, bitscore): QRSL1 (Homo sapiens, 229.2); Qrsl1 (Mus musculus, 239.2); qrsl1 (Danio rerio, 236.1); qrsl1 (Xenopus tropicalis, 229.6); gatA (Drosophila melanogaster, 229.9); Y41D4A.6 (Caenorhabditis elegans, 204.9); AT3G25660 (Arabidopsis thaliana, 242.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:894448-895842:- | gene-YMR293C_AKU4011 | rna-NM_001182801.1_AKU4011 | cds-NP_014021.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:57860-59254:+ | gene-YMR293C_BG1 | rna-NM_001182801.1_BG1 | cds-NP_014021.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:839660-841054:- | gene-YMR293C_Bruggeman | rna-NM_001182801.1_Bruggeman | cds-NP_014021.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:842941-844335:- | gene-YMR293C_CAT1 | rna-NM_001182801.1_CAT1 | cds-NP_014021.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:826699-828093:- | gene-YMR293C_CBS1585 | rna-NM_001182801.1_CBS1585 | cds-NP_014021.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:849017-850411:- | gene-YMR293C_CBS436 | rna-NM_001182801.1_CBS436 | cds-NP_014021.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:938274-939668:- | gene-YMR293C_CBS6412 | rna-NM_001182801.1_CBS6412 | cds-NP_014021.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:825818-827212:- | gene-YMR293C_CBS6413 | rna-NM_001182801.1_CBS6413 | cds-NP_014021.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:849943-851337:- | gene-YMR293C_CENPK1137D | rna-NM_001182801.1_CENPK1137D | cds-NP_014021.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:887142-888536:- | gene-YMR293C_EthanolRed | rna-NM_001182801.1_EthanolRed | cds-NP_014021.1_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:833169-834563:- | gene-YMR293C_FaliES1 | rna-NM_001182801.1_FaliES1 | cds-NP_014021.1_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000262.1:17171-18565:+ | gene-YMR293C_JAY291 | rna-NM_001182801.1_JAY291 | cds-NP_014021.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:833484-834878:- | gene-YMR293C_MUCL30387 | rna-NM_001182801.1_MUCL30387 | cds-NP_014021.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:842874-844268:- | gene-YMR293C_MUCL30388 | rna-NM_001182801.1_MUCL30388 | cds-NP_014021.1_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:827764-829158:- | gene-YMR293C_MUCL39482 | rna-NM_001182801.1_MUCL39482 | cds-NP_014021.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:836588-837982:- | gene-YMR293C_MUCL42920 | rna-NM_001182801.1_MUCL42920 | cds-NP_014021.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:855353-856747:- | gene-YMR293C_NCIM3186 | rna-NM_001182801.1_NCIM3186 | cds-NP_014021.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:827418-828812:- | gene-YMR293C_NCYC1407 | rna-NM_001182801.1_NCYC1407 | cds-NP_014021.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:843238-844632:- | gene-YMR293C_PE2H3 | rna-NM_001182801.1_PE2H3 | cds-NP_014021.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:839213-840607:- | gene-YMR293C_PE2H4 | rna-NM_001182801.1_PE2H4 | cds-NP_014021.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:855399-856793:- | gene-YMR293C_S288C | rna-NM_001182801.1_S288C | cds-NP_014021.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000036.1:33195-34589:- | gene-YMR293C_SA1 | rna-NM_001182801.1_SA1 | cds-NP_014021.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:829337-830731:- | gene-YMR293C_ThermosaccDry | rna-NM_001182801.1_ThermosaccDry | cds-NP_014021.1_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:843091-844485:- | gene-YMR293C_VR1 | rna-NM_001182801.1_VR1 | cds-NP_014021.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:244573-245967:- | gene-YMR293C_ZTW1 | rna-NM_001182801.1_ZTW1 | cds-NP_014021.1_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:847977-849371:- | gene-YMR293C_Sparadoxus | rna-NM_001182801.1_Sparadoxus | cds-NP_014021.1_Sparadoxus | 89.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |