Gene name: HDA3
Reference locus (S288C): YPR179C
Gene biotype: protein_coding
Description: Subunit of the HDA1 histone deacetylase complex; possibly tetrameric trichostatin A-sensitive class II histone deacetylase complex contains Hda1p homodimer and an Hda2p-Hda3p heterodimer; required for the activity of the complex; relocalizes to the cytosol in response to hypoxia; similar to Hda2p
Top 10 interactors (score): HDA1 (0.999); HDA2 (0.99); HOS3 (0.782); HOS1 (0.782); HOS2 (0.78); MSH2 (0.748); UME1 (0.671); YJR084W (0.525); PHO23 (0.508); MAK31 (0.483); RXT2 (0.467); PSR2 (0.45); CSN9 (0.45); ITC1 (0.444); SEM1 (0.444); CSE4 (0.428); VPS72 (0.418); SIF2 (0.4)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:848076-850043:- | gene-YPR179C_AKU4011 | rna-NM_001184276.1_AKU4011 | cds-NP_015505.1_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:47667-49634:+ | gene-YPR179C_BG1 | rna-NM_001184276.1_BG1 | cds-NP_015505.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:929360-931327:- | gene-YPR179C_Bruggeman | rna-NM_001184276.1_Bruggeman | cds-NP_015505.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:971416-973383:- | gene-YPR179C_CAT1 | rna-NM_001184276.1_CAT1 | cds-NP_015505.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:852878-854845:- | gene-YPR179C_CBS1585 | rna-NM_001184276.1_CBS1585 | cds-NP_015505.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:866424-868391:- | gene-YPR179C_CBS436 | rna-NM_001184276.1_CBS436 | cds-NP_015505.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:854662-856629:- | gene-YPR179C_CBS6412 | rna-NM_001184276.1_CBS6412 | cds-NP_015505.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:849806-851773:- | gene-YPR179C_CBS6413 | rna-NM_001184276.1_CBS6413 | cds-NP_015505.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:893882-895849:- | gene-YPR179C_CENPK1137D | rna-NM_001184276.1_CENPK1137D | cds-NP_015505.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1169838-1171805:- | gene-YPR179C_EthanolRed | rna-NM_001184276.1_EthanolRed | cds-NP_015505.1_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:849911-851878:- | gene-YPR179C_FaliES1 | rna-NM_001184276.1_FaliES1 | cds-NP_015505.1_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000081.1:37207-39174:- | gene-YPR179C_JAY291 | rna-NM_001184276.1_JAY291 | cds-NP_015505.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:896606-898573:- | gene-YPR179C_MUCL30387 | rna-NM_001184276.1_MUCL30387 | cds-NP_015505.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:870735-872702:- | gene-YPR179C_MUCL30388 | rna-NM_001184276.1_MUCL30388 | cds-NP_015505.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:845078-847045:- | gene-YPR179C_MUCL39482 | rna-NM_001184276.1_MUCL39482 | cds-NP_015505.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:909548-911515:- | gene-YPR179C_MUCL42920 | rna-NM_001184276.1_MUCL42920 | cds-NP_015505.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:893780-895747:- | gene-YPR179C_NCIM3186 | rna-NM_001184276.1_NCIM3186 | cds-NP_015505.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:853439-855406:- | gene-YPR179C_NCYC1407 | rna-NM_001184276.1_NCYC1407 | cds-NP_015505.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:865731-867698:- | gene-YPR179C_PE2H3 | rna-NM_001184276.1_PE2H3 | cds-NP_015505.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:865379-867346:- | gene-YPR179C_PE2H4 | rna-NM_001184276.1_PE2H4 | cds-NP_015505.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:893797-895764:- | gene-YPR179C_S288C | rna-NM_001184276.1_S288C | cds-NP_015505.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000060.1:30048-32015:+ | gene-YPR179C_SA1 | rna-NM_001184276.1_SA1 | cds-NP_015505.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:849599-851566:- | gene-YPR179C_ThermosaccDry | rna-NM_001184276.1_ThermosaccDry | cds-NP_015505.1_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:877386-879353:- | gene-YPR179C_VR1 | rna-NM_001184276.1_VR1 | cds-NP_015505.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:852148-854115:- | gene-YPR179C_ZTW1 | rna-NM_001184276.1_ZTW1 | cds-NP_015505.1_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:854216-856182:- | gene-YPR179C_Sparadoxus | rna-NM_001184276.1_Sparadoxus | cds-NP_015505.1_Sparadoxus | 89.0 | 99.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |