Gene name: HDA2
Reference locus (S288C): YDR295C
Gene biotype: protein_coding
Description: Subunit of the HDA1 histone deacetylase complex; possibly tetrameric trichostatin A-sensitive class II histone deacetylase complex contains Hda1p homodimer and an Hda2p-Hda3p heterodimer; involved in telomere maintenance; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): HDA1 (0.999); HDA3 (0.99); MSH2 (0.795); HOS1 (0.746); HOS3 (0.712); PHO23 (0.689); HOS2 (0.676); YTP1 (0.611); RRP6 (0.609); NUF2 (0.58); GCN5 (0.579); PHO84 (0.573); SPC24 (0.495); DEP1 (0.488); SAP30 (0.486); COX8 (0.482); RBG1 (0.482); RPD3 (0.47); PAP2 (0.467); RCO1 (0.454)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1004600-1006624:- | gene-YDR295C_AKU4011 | rna-NM_001180603.3_AKU4011 | cds-NP_010581.3_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:124927-126951:+ | gene-YDR295C_BG1 | rna-NM_001180603.3_BG1 | cds-NP_010581.3_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1031878-1033902:- | gene-YDR295C_Bruggeman | rna-NM_001180603.3_Bruggeman | cds-NP_010581.3_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1018889-1020913:- | gene-YDR295C_CAT1 | rna-NM_001180603.3_CAT1 | cds-NP_010581.3_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:999045-1001069:- | gene-YDR295C_CBS1585 | rna-NM_001180603.3_CBS1585 | cds-NP_010581.3_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1017417-1019441:- | gene-YDR295C_CBS436 | rna-NM_001180603.3_CBS436 | cds-NP_010581.3_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:995727-997751:- | gene-YDR295C_CBS6412 | rna-NM_001180603.3_CBS6412 | cds-NP_010581.3_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1016965-1018989:- | gene-YDR295C_CBS6413 | rna-NM_001180603.3_CBS6413 | cds-NP_010581.3_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1051267-1053291:- | gene-YDR295C_CENPK1137D | rna-NM_001180603.3_CENPK1137D | cds-NP_010581.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1003141-1005165:- | gene-YDR295C_EthanolRed | rna-NM_001180603.3_EthanolRed | cds-NP_010581.3_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1011343-1013367:- | gene-YDR295C_FaliES1 | rna-NM_001180603.3_FaliES1 | cds-NP_010581.3_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000130.1:29175-31199:- | gene-YDR295C_JAY291 | rna-NM_001180603.3_JAY291 | cds-NP_010581.3_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1017394-1019418:- | gene-YDR295C_MUCL30387 | rna-NM_001180603.3_MUCL30387 | cds-NP_010581.3_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1004460-1006484:- | gene-YDR295C_MUCL30388 | rna-NM_001180603.3_MUCL30388 | cds-NP_010581.3_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:990851-992875:- | gene-YDR295C_MUCL39482 | rna-NM_001180603.3_MUCL39482 | cds-NP_010581.3_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:930843-932867:- | gene-YDR295C_MUCL42920 | rna-NM_001180603.3_MUCL42920 | cds-NP_010581.3_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1052546-1054570:- | gene-YDR295C_NCIM3186 | rna-NM_001180603.3_NCIM3186 | cds-NP_010581.3_NCIM3186 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1004144-1006168:- | gene-YDR295C_NCYC1407 | rna-NM_001180603.3_NCYC1407 | cds-NP_010581.3_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1015147-1017171:- | gene-YDR295C_PE2H3 | rna-NM_001180603.3_PE2H3 | cds-NP_010581.3_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1020732-1022756:- | gene-YDR295C_PE2H4 | rna-NM_001180603.3_PE2H4 | cds-NP_010581.3_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1052623-1054647:- | gene-YDR295C_S288C | rna-NM_001180603.3_S288C | cds-NP_010581.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000025.1:29354-31378:- | gene-YDR295C_SA1 | rna-NM_001180603.3_SA1 | cds-NP_010581.3_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1015628-1017652:- | gene-YDR295C_ThermosaccDry | rna-NM_001180603.3_ThermosaccDry | cds-NP_010581.3_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1031573-1033597:- | gene-YDR295C_VR1 | rna-NM_001180603.3_VR1 | cds-NP_010581.3_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:59759-61783:- | gene-YDR295C_ZTW1 | rna-NM_001180603.3_ZTW1 | cds-NP_010581.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1011242-1013266:- | gene-YDR295C_Sparadoxus | rna-NM_001180603.3_Sparadoxus | cds-NP_010581.3_Sparadoxus | 87.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |