Gene name: HCA4
Reference locus (S288C): YJL033W
Gene biotype: protein_coding
Description: DEAD box RNA helicase; component of the SSU; interacts with Bfr2p and Enp2p; high-copy number suppression of a U14 snoRNA processing mutant suggests an involvement in 18S rRNA synthesis; Belongs to the DEAD box helicase family. DDX10/DBP4 subfamily
Top 10 interactors (score): ECM16 (0.999); MPP10 (0.999); UTP14 (0.999); UTP21 (0.999); SAS10 (0.999); BFR2 (0.999); RRP5 (0.999); ESF1 (0.999); RRP36 (0.999); ENP2 (0.999); PWP2 (0.999); SGD1 (0.999); MTR4 (0.999); NOP58 (0.999); HAS1 (0.999); UTP18 (0.999); ESF2 (0.999); UTP13 (0.999); RRP12 (0.998); UTP25 (0.998)
Homologues (species, bitscore): DDX10 (Homo sapiens, 510.4); Ddx10 (Mus musculus, 514.2); ddx10 (Danio rerio, 501.5); ddx10 (Xenopus tropicalis, 489.2); CG5800 (Drosophila melanogaster, 492.7); Y23H5B.6 (Caenorhabditis elegans, 448.7); AT5G54910 (Arabidopsis thaliana, 461.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:366794-369106:+ | gene-YJL033W_AKU4011 | rna-NM_001181467.1_AKU4011 | cds-NP_012501.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:244977-247289:- | gene-YJL033W_BG1 | rna-NM_001181467.1_BG1 | cds-NP_012501.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:380985-383297:+ | gene-YJL033W_Bruggeman | rna-NM_001181467.1_Bruggeman | cds-NP_012501.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:384944-387256:+ | gene-YJL033W_CAT1 | rna-NM_001181467.1_CAT1 | cds-NP_012501.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:378458-380770:+ | gene-YJL033W_CBS1585 | rna-NM_001181467.1_CBS1585 | cds-NP_012501.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:396815-399127:+ | gene-YJL033W_CBS436 | rna-NM_001181467.1_CBS436 | cds-NP_012501.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:367056-369368:+ | gene-YJL033W_CBS6412 | rna-NM_001181467.1_CBS6412 | cds-NP_012501.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:368936-371248:+ | gene-YJL033W_CBS6413 | rna-NM_001181467.1_CBS6413 | cds-NP_012501.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:366263-368575:+ | gene-YJL033W_CENPK1137D | rna-NM_001181467.1_CENPK1137D | cds-NP_012501.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:370010-372322:+ | gene-YJL033W_EthanolRed | rna-NM_001181467.1_EthanolRed | cds-NP_012501.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:382458-384770:+ | gene-YJL033W_FaliES1 | rna-NM_001181467.1_FaliES1 | cds-NP_012501.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000200.1:30660-32972:- | gene-YJL033W_JAY291 | rna-NM_001181467.1_JAY291 | cds-NP_012501.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:381226-383538:+ | gene-YJL033W_MUCL30387 | rna-NM_001181467.1_MUCL30387 | cds-NP_012501.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:377374-379686:+ | gene-YJL033W_MUCL30388 | rna-NM_001181467.1_MUCL30388 | cds-NP_012501.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:371782-374094:+ | gene-YJL033W_MUCL39482 | rna-NM_001181467.1_MUCL39482 | cds-NP_012501.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:377116-379428:+ | gene-YJL033W_MUCL42920 | rna-NM_001181467.1_MUCL42920 | cds-NP_012501.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:383816-386128:+ | gene-YJL033W_NCIM3186 | rna-NM_001181467.1_NCIM3186 | cds-NP_012501.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:369731-372043:+ | gene-YJL033W_NCYC1407 | rna-NM_001181467.1_NCYC1407 | cds-NP_012501.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:381807-384119:+ | gene-YJL033W_PE2H3 | rna-NM_001181467.1_PE2H3 | cds-NP_012501.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:381451-383763:+ | gene-YJL033W_PE2H4 | rna-NM_001181467.1_PE2H4 | cds-NP_012501.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:383837-386149:+ | gene-YJL033W_S288C | rna-NM_001181467.1_S288C | cds-NP_012501.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:179337-181649:+ | gene-YJL033W_SA1 | rna-NM_001181467.1_SA1 | cds-NP_012501.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:376119-378431:+ | gene-YJL033W_ThermosaccDry | rna-NM_001181467.1_ThermosaccDry | cds-NP_012501.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:377963-380275:+ | gene-YJL033W_VR1 | rna-NM_001181467.1_VR1 | cds-NP_012501.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:356783-359095:+ | gene-YJL033W_ZTW1 | rna-NM_001181467.1_ZTW1 | cds-NP_012501.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:382040-384352:+ | gene-YJL033W_Sparadoxus | rna-NM_001181467.1_Sparadoxus | cds-NP_012501.1_Sparadoxus | 92.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |