Gene name: HAS1
Reference locus (S288C): YMR290C
Gene biotype: protein_coding
Description: ATP-dependent RNA helicase; involved in the biogenesis of 40S and 60S ribosome subunits; localizes to both the nuclear periphery and nucleolus; highly enriched in nuclear pore complex fractions; constituent of 66S pre-ribosomal particles
Top 10 interactors (score): ECM16 (0.999); MAK21 (0.999); CIC1 (0.999); NOG1 (0.999); TIF6 (0.999); NOP4 (0.999); UTP14 (0.999); HCA4 (0.999); NMD3 (0.999); UTP21 (0.999); NOP9 (0.999); NOC4 (0.999); RRP15 (0.999); UTP10 (0.999); DBP10 (0.999); KRE33 (0.999); MPP10 (0.999); RLP7 (0.999); PUF6 (0.999); UTP4 (0.999)
Homologues (species, bitscore): DDX18 (Homo sapiens, 646.7); Ddx18 (Mus musculus, 643.7); ddx18 (Danio rerio, 661.0); ddx10 (Xenopus tropicalis, 371.7); pit (Drosophila melanogaster, 637.9); B0511.6 (Caenorhabditis elegans, 613.2); AT5G65900 (Arabidopsis thaliana, 561.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:889127-890644:- | gene-YMR290C_AKU4011 | rna-NM_001182797.1_AKU4011 | cds-NP_014017.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:63030-64547:+ | gene-YMR290C_BG1 | rna-NM_001182797.1_BG1 | cds-NP_014017.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:834335-835852:- | gene-YMR290C_Bruggeman | rna-NM_001182797.1_Bruggeman | cds-NP_014017.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:837621-839138:- | gene-YMR290C_CAT1 | rna-NM_001182797.1_CAT1 | cds-NP_014017.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:821377-822894:- | gene-YMR290C_CBS1585 | rna-NM_001182797.1_CBS1585 | cds-NP_014017.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:843691-845208:- | gene-YMR290C_CBS436 | rna-NM_001182797.1_CBS436 | cds-NP_014017.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:932951-934468:- | gene-YMR290C_CBS6412 | rna-NM_001182797.1_CBS6412 | cds-NP_014017.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:820498-822015:- | gene-YMR290C_CBS6413 | rna-NM_001182797.1_CBS6413 | cds-NP_014017.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:844620-846137:- | gene-YMR290C_CENPK1137D | rna-NM_001182797.1_CENPK1137D | cds-NP_014017.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:881817-883334:- | gene-YMR290C_EthanolRed | rna-NM_001182797.1_EthanolRed | cds-NP_014017.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:827844-829361:- | gene-YMR290C_FaliES1 | rna-NM_001182797.1_FaliES1 | cds-NP_014017.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000262.1:22373-23890:+ | gene-YMR290C_JAY291 | rna-NM_001182797.1_JAY291 | cds-NP_014017.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:828160-829677:- | gene-YMR290C_MUCL30387 | rna-NM_001182797.1_MUCL30387 | cds-NP_014017.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:837557-839074:- | gene-YMR290C_MUCL30388 | rna-NM_001182797.1_MUCL30388 | cds-NP_014017.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:822465-823982:- | gene-YMR290C_MUCL39482 | rna-NM_001182797.1_MUCL39482 | cds-NP_014017.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:831269-832786:- | gene-YMR290C_MUCL42920 | rna-NM_001182797.1_MUCL42920 | cds-NP_014017.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:850028-851545:- | gene-YMR290C_NCIM3186 | rna-NM_001182797.1_NCIM3186 | cds-NP_014017.1_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:822108-823625:- | gene-YMR290C_NCYC1407 | rna-NM_001182797.1_NCYC1407 | cds-NP_014017.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:837912-839429:- | gene-YMR290C_PE2H3 | rna-NM_001182797.1_PE2H3 | cds-NP_014017.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:833886-835403:- | gene-YMR290C_PE2H4 | rna-NM_001182797.1_PE2H4 | cds-NP_014017.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:850074-851591:- | gene-YMR290C_S288C | rna-NM_001182797.1_S288C | cds-NP_014017.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000036.1:27842-29359:- | gene-YMR290C_SA1 | rna-NM_001182797.1_SA1 | cds-NP_014017.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:824013-825530:- | gene-YMR290C_ThermosaccDry | rna-NM_001182797.1_ThermosaccDry | cds-NP_014017.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:837757-839274:- | gene-YMR290C_VR1 | rna-NM_001182797.1_VR1 | cds-NP_014017.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:239247-240764:- | gene-YMR290C_ZTW1 | rna-NM_001182797.1_ZTW1 | cds-NP_014017.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:842642-844159:- | gene-YMR290C_Sparadoxus | rna-NM_001182797.1_Sparadoxus | cds-NP_014017.1_Sparadoxus | 92.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |