Gene name: GYP8
Reference locus (S288C): YFL027C
Gene biotype: protein_coding
Description: GTPase-activating protein for yeast Rab family members; Ypt1p is the preferred in vitro substrate but also acts on Sec4p, Ypt31p and Ypt32p; involved in the regulation of ER to Golgi vesicle transport
Top 10 interactors (score): YPT1 (0.977); GYP7 (0.944); GYP5 (0.939); GYP1 (0.916); MDR1 (0.908); GYP6 (0.854); YPT6 (0.794); MSB3 (0.791); MSB4 (0.791); GYL1 (0.788); SEC4 (0.786); CDC16 (0.754); NAR1 (0.745); YPT11 (0.731); YPT7 (0.72); KTR7 (0.711); GDI1 (0.673); YPT53 (0.646); YPT52 (0.645); RIC1 (0.624)
Homologues (species, bitscore): TBC1D20 (Homo sapiens, 75.1); Tbc1d20 (Mus musculus, 69.3); tbc1d20 (Danio rerio, 82.8); tbc1d20.1 (Xenopus tropicalis, 72.0); CG17883 (Drosophila melanogaster, 78.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:76773-78266:- | gene-YFL027C_AKU4011 | rna-NM_001179939.1_AKU4011 | cds-NP_444296.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000089.1:7097-8590:- | gene-YFL027C_BG1 | rna-NM_001179939.1_BG1 | cds-NP_444296.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:75639-77132:- | gene-YFL027C_Bruggeman | rna-NM_001179939.1_Bruggeman | cds-NP_444296.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:80786-82279:- | gene-YFL027C_CAT1 | rna-NM_001179939.1_CAT1 | cds-NP_444296.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:77581-79074:- | gene-YFL027C_CBS1585 | rna-NM_001179939.1_CBS1585 | cds-NP_444296.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:51085-52578:- | gene-YFL027C_CBS436 | rna-NM_001179939.1_CBS436 | cds-NP_444296.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:77315-78808:- | gene-YFL027C_CBS6412 | rna-NM_001179939.1_CBS6412 | cds-NP_444296.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:79850-81343:- | gene-YFL027C_CBS6413 | rna-NM_001179939.1_CBS6413 | cds-NP_444296.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:76745-78238:- | gene-YFL027C_CENPK1137D | rna-NM_001179939.1_CENPK1137D | cds-NP_444296.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:75738-77231:- | gene-YFL027C_EthanolRed | rna-NM_001179939.1_EthanolRed | cds-NP_444296.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:77377-78870:- | gene-YFL027C_FaliES1 | rna-NM_001179939.1_FaliES1 | cds-NP_444296.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000448.1:85766-87259:- | gene-YFL027C_JAY291 | rna-NM_001179939.1_JAY291 | cds-NP_444296.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:77734-79227:- | gene-YFL027C_MUCL30387 | rna-NM_001179939.1_MUCL30387 | cds-NP_444296.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:75671-77164:- | gene-YFL027C_MUCL30388 | rna-NM_001179939.1_MUCL30388 | cds-NP_444296.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:75966-77459:- | gene-YFL027C_MUCL39482 | rna-NM_001179939.1_MUCL39482 | cds-NP_444296.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:74074-75567:- | gene-YFL027C_MUCL42920 | rna-NM_001179939.1_MUCL42920 | cds-NP_444296.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:80418-81911:- | gene-YFL027C_NCIM3186 | rna-NM_001179939.1_NCIM3186 | cds-NP_444296.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:77055-78548:- | gene-YFL027C_NCYC1407 | rna-NM_001179939.1_NCYC1407 | cds-NP_444296.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:96956-98449:- | gene-YFL027C_PE2H3 | rna-NM_001179939.1_PE2H3 | cds-NP_444296.1_PE2H3 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:96507-98000:- | gene-YFL027C_PE2H4 | rna-NM_001179939.1_PE2H4 | cds-NP_444296.1_PE2H4 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:80419-81912:- | gene-YFL027C_S288C | rna-NM_001179939.1_S288C | cds-NP_444296.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000117.1:4485-5978:- | gene-YFL027C_SA1 | rna-NM_001179939.1_SA1 | cds-NP_444296.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:76560-78053:- | gene-YFL027C_ThermosaccDry | rna-NM_001179939.1_ThermosaccDry | cds-NP_444296.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:85094-86587:- | gene-YFL027C_VR1 | rna-NM_001179939.1_VR1 | cds-NP_444296.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:7032-8525:- | gene-YFL027C_ZTW1 | rna-NM_001179939.1_ZTW1 | cds-NP_444296.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:100809-102302:- | gene-YFL027C_Sparadoxus | rna-NM_001179939.1_Sparadoxus | cds-NP_444296.1_Sparadoxus | 88.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |