Gene name: GYP7
Reference locus (S288C): YDL234C
Gene biotype: protein_coding
Description: GTPase-activating protein for yeast Rab family members; members include Ypt7p (most effective), Ypt1p, Ypt31p, and Ypt32p (in vitro); involved in vesicle mediated protein trafficking; contains a PH-like domain
Top 10 interactors (score): YPT7 (0.996); GYP5 (0.974); GYP8 (0.944); CMK2 (0.913); MDR1 (0.91); GDI1 (0.902); ATG8 (0.9); MSB4 (0.874); MSB3 (0.865); GYL1 (0.851); GYP6 (0.85); VPS41 (0.846); YCK3 (0.845); SEC18 (0.837); CDC16 (0.817); VAM6 (0.816); VID27 (0.801); RCN2 (0.798); SPO71 (0.785); YPT53 (0.775)
Homologues (species, bitscore): TBC1D15 (Homo sapiens, 209.5); Tbc1d15 (Mus musculus, 212.6); tbc1d17 (Danio rerio, 202.6); TBC1D15 (Xenopus tropicalis, 211.8); Tbc1d15-17 (Drosophila melanogaster, 201.1); tbc-15 (Caenorhabditis elegans, 151.4); AT5G52580 (Arabidopsis thaliana, 197.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:17398-19638:- | gene-YDL234C_AKU4011 | rna-NM_001180294.1_AKU4011 | cds-NP_010047.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000077.1:46875-49115:+ | gene-YDL234C_BG1 | rna-NM_001180294.1_BG1 | cds-NP_010047.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:33060-35300:- | gene-YDL234C_Bruggeman | rna-NM_001180294.1_Bruggeman | cds-NP_010047.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:35979-38219:- | gene-YDL234C_CAT1 | rna-NM_001180294.1_CAT1 | cds-NP_010047.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:16773-19013:- | gene-YDL234C_CBS1585 | rna-NM_001180294.1_CBS1585 | cds-NP_010047.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:33482-35722:- | gene-YDL234C_CBS436 | rna-NM_001180294.1_CBS436 | cds-NP_010047.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:17219-19459:- | gene-YDL234C_CBS6412 | rna-NM_001180294.1_CBS6412 | cds-NP_010047.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:34158-36398:- | gene-YDL234C_CBS6413 | rna-NM_001180294.1_CBS6413 | cds-NP_010047.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:33205-35445:- | gene-YDL234C_CENPK1137D | rna-NM_001180294.1_CENPK1137D | cds-NP_010047.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:30932-33172:- | gene-YDL234C_EthanolRed | rna-NM_001180294.1_EthanolRed | cds-NP_010047.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:34234-36474:- | gene-YDL234C_FaliES1 | rna-NM_001180294.1_FaliES1 | cds-NP_010047.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000011.1:8049-10289:+ | gene-YDL234C_JAY291 | rna-NM_001180294.1_JAY291 | cds-NP_010047.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:32355-34595:- | gene-YDL234C_MUCL30387 | rna-NM_001180294.1_MUCL30387 | cds-NP_010047.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:21922-24162:- | gene-YDL234C_MUCL30388 | rna-NM_001180294.1_MUCL30388 | cds-NP_010047.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:17367-19607:- | gene-YDL234C_MUCL39482 | rna-NM_001180294.1_MUCL39482 | cds-NP_010047.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:33493-35733:- | gene-YDL234C_MUCL42920 | rna-NM_001180294.1_MUCL42920 | cds-NP_010047.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:34160-36400:- | gene-YDL234C_NCIM3186 | rna-NM_001180294.1_NCIM3186 | cds-NP_010047.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:17323-19563:- | gene-YDL234C_NCYC1407 | rna-NM_001180294.1_NCYC1407 | cds-NP_010047.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:24552-26792:- | gene-YDL234C_PE2H3 | rna-NM_001180294.1_PE2H3 | cds-NP_010047.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:24562-26802:- | gene-YDL234C_PE2H4 | rna-NM_001180294.1_PE2H4 | cds-NP_010047.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:34237-36477:- | gene-YDL234C_S288C | rna-NM_001180294.1_S288C | cds-NP_010047.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000107.1:7834-10074:+ | gene-YDL234C_SA1 | rna-NM_001180294.1_SA1 | cds-NP_010047.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:34362-36602:- | gene-YDL234C_ThermosaccDry | rna-NM_001180294.1_ThermosaccDry | cds-NP_010047.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:34288-36528:- | gene-YDL234C_VR1 | rna-NM_001180294.1_VR1 | cds-NP_010047.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:33421-35661:- | gene-YDL234C_ZTW1 | rna-NM_001180294.1_ZTW1 | cds-NP_010047.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:36720-38957:- | gene-YDL234C_Sparadoxus | rna-NM_001180294.1_Sparadoxus | cds-NP_010047.1_Sparadoxus | 91.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |