Gene name: GYP6
Reference locus (S288C): YJL044C
Gene biotype: protein_coding
Description: Gtpase-activating protein gyp6; GTPase-activating protein (GAP) for yeast Rab family member Ypt6p; involved in vesicle mediated protein transport
Top 10 interactors (score): VPS29 (0.997); YPT6 (0.972); YPT32 (0.94); PEP8 (0.938); GYP1 (0.93); VPS35 (0.888); NHX1 (0.88); YPT7 (0.87); GYP8 (0.854); GYP7 (0.85); YPT31 (0.831); MDR1 (0.812); YPT1 (0.792); VID28 (0.788); SNX3 (0.767); TRS130 (0.757); GYP5 (0.751); MSB3 (0.749); SEC4 (0.719); BET3 (0.717)
Homologues (species, bitscore): TBC1D5 (Homo sapiens, 58.5); Tbc1d5 (Mus musculus, 55.5); tbc1d5 (Danio rerio, 67.0); tbc1d5 (Xenopus tropicalis, 65.1); CG8449 (Drosophila melanogaster, 50.4); rbg-3 (Caenorhabditis elegans, 58.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:340770-342146:- | gene-YJL044C_AKU4011 | rna-NM_001181477.3_AKU4011 | cds-NP_012491.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:271171-272547:+ | gene-YJL044C_BG1 | rna-NM_001181477.3_BG1 | cds-NP_012491.3_BG1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:354295-355671:- | gene-YJL044C_Bruggeman | rna-NM_001181477.3_Bruggeman | cds-NP_012491.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:359155-360531:- | gene-YJL044C_CAT1 | rna-NM_001181477.3_CAT1 | cds-NP_012491.3_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:352424-353800:- | gene-YJL044C_CBS1585 | rna-NM_001181477.3_CBS1585 | cds-NP_012491.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:371281-372657:- | gene-YJL044C_CBS436 | rna-NM_001181477.3_CBS436 | cds-NP_012491.3_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:341931-343307:- | gene-YJL044C_CBS6412 | rna-NM_001181477.3_CBS6412 | cds-NP_012491.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:342876-344252:- | gene-YJL044C_CBS6413 | rna-NM_001181477.3_CBS6413 | cds-NP_012491.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:340784-342160:- | gene-YJL044C_CENPK1137D | rna-NM_001181477.3_CENPK1137D | cds-NP_012491.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:345194-346570:- | gene-YJL044C_EthanolRed | rna-NM_001181477.3_EthanolRed | cds-NP_012491.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:356431-357807:- | gene-YJL044C_FaliES1 | rna-NM_001181477.3_FaliES1 | cds-NP_012491.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000200.1:56845-58221:+ | gene-YJL044C_JAY291 | rna-NM_001181477.3_JAY291 | cds-NP_012491.3_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:354751-356127:- | gene-YJL044C_MUCL30387 | rna-NM_001181477.3_MUCL30387 | cds-NP_012491.3_MUCL30387 | 99.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:350514-351890:- | gene-YJL044C_MUCL30388 | rna-NM_001181477.3_MUCL30388 | cds-NP_012491.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:345757-347133:- | gene-YJL044C_MUCL39482 | rna-NM_001181477.3_MUCL39482 | cds-NP_012491.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:351873-353249:- | gene-YJL044C_MUCL42920 | rna-NM_001181477.3_MUCL42920 | cds-NP_012491.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:358279-359655:- | gene-YJL044C_NCIM3186 | rna-NM_001181477.3_NCIM3186 | cds-NP_012491.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:343874-345250:- | gene-YJL044C_NCYC1407 | rna-NM_001181477.3_NCYC1407 | cds-NP_012491.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:356267-357643:- | gene-YJL044C_PE2H3 | rna-NM_001181477.3_PE2H3 | cds-NP_012491.3_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:355912-357288:- | gene-YJL044C_PE2H4 | rna-NM_001181477.3_PE2H4 | cds-NP_012491.3_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:358300-359676:- | gene-YJL044C_S288C | rna-NM_001181477.3_S288C | cds-NP_012491.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:153803-155179:- | gene-YJL044C_SA1 | rna-NM_001181477.3_SA1 | cds-NP_012491.3_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:350093-351469:- | gene-YJL044C_ThermosaccDry | rna-NM_001181477.3_ThermosaccDry | cds-NP_012491.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:352023-353399:- | gene-YJL044C_VR1 | rna-NM_001181477.3_VR1 | cds-NP_012491.3_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:331307-332683:- | gene-YJL044C_ZTW1 | rna-NM_001181477.3_ZTW1 | cds-NP_012491.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:367864-369239:+ | gene-YJL044C_Sparadoxus | rna-NM_001181477.3_Sparadoxus | cds-NP_012491.3_Sparadoxus | 90.1 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |