Gene name: GYP1
Reference locus (S288C): YOR070C
Gene biotype: protein_coding
Description: Cis-golgi GTPase-activating protein (GAP) for yeast Rabs; the Rab family members are Ypt1p (in vivo) and for Ypt1p, Sec4p, Ypt7p, and Ypt51p (in vitro); involved in vesicle docking and fusion
Top 10 interactors (score): YPT32 (0.995); YPT1 (0.988); YPT7 (0.945); YPT31 (0.932); GYP6 (0.93); YPT6 (0.927); GYP5 (0.918); GYP8 (0.916); MDR1 (0.911); MSB3 (0.903); MSB4 (0.9); SEC4 (0.898); SEC17 (0.869); GYL1 (0.861); ARL1 (0.843); DSS4 (0.831); VPS21 (0.822); GDI1 (0.82); SEC7 (0.798); SYS1 (0.783)
Homologues (species, bitscore): TBC1D22B (Homo sapiens, 303.1); Tbc1d22b (Mus musculus, 299.3); tbc1d22a (Danio rerio, 292.4); tbc1d22b (Xenopus tropicalis, 293.5); CG5745 (Drosophila melanogaster, 289.3); tbc-3 (Caenorhabditis elegans, 278.5); AT2G30710 (Arabidopsis thaliana, 303.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:440241-442154:- | gene-YOR070C_AKU4011 | rna-NM_001183489.1_AKU4011 | cds-NP_014713.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000171.1:137547-139460:+ | gene-YOR070C_BG1 | rna-NM_001183489.1_BG1 | cds-NP_014713.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:442955-444868:- | gene-YOR070C_Bruggeman | rna-NM_001183489.1_Bruggeman | cds-NP_014713.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:441711-443624:- | gene-YOR070C_CAT1 | rna-NM_001183489.1_CAT1 | cds-NP_014713.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:434961-436874:- | gene-YOR070C_CBS1585 | rna-NM_001183489.1_CBS1585 | cds-NP_014713.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:439239-441152:- | gene-YOR070C_CBS436 | rna-NM_001183489.1_CBS436 | cds-NP_014713.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:434251-436164:- | gene-YOR070C_CBS6412 | rna-NM_001183489.1_CBS6412 | cds-NP_014713.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:441568-443481:- | gene-YOR070C_CBS6413 | rna-NM_001183489.1_CBS6413 | cds-NP_014713.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:455889-457802:- | gene-YOR070C_CENPK1137D | rna-NM_001183489.1_CENPK1137D | cds-NP_014713.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:436953-438866:- | gene-YOR070C_EthanolRed | rna-NM_001183489.1_EthanolRed | cds-NP_014713.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:440282-442195:- | gene-YOR070C_FaliES1 | rna-NM_001183489.1_FaliES1 | cds-NP_014713.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000407.1:2162-4075:+ | gene-YOR070C_JAY291 | rna-NM_001183489.1_JAY291 | cds-NP_014713.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:447737-449650:- | gene-YOR070C_MUCL30387 | rna-NM_001183489.1_MUCL30387 | cds-NP_014713.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:452147-454060:- | gene-YOR070C_MUCL30388 | rna-NM_001183489.1_MUCL30388 | cds-NP_014713.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:442429-444342:- | gene-YOR070C_MUCL39482 | rna-NM_001183489.1_MUCL39482 | cds-NP_014713.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:457560-459473:- | gene-YOR070C_MUCL42920 | rna-NM_001183489.1_MUCL42920 | cds-NP_014713.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:455796-457709:- | gene-YOR070C_NCIM3186 | rna-NM_001183489.1_NCIM3186 | cds-NP_014713.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:449347-451260:- | gene-YOR070C_NCYC1407 | rna-NM_001183489.1_NCYC1407 | cds-NP_014713.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:447940-449853:- | gene-YOR070C_PE2H3 | rna-NM_001183489.1_PE2H3 | cds-NP_014713.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:458321-460234:- | gene-YOR070C_PE2H4 | rna-NM_001183489.1_PE2H4 | cds-NP_014713.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:455907-457820:- | gene-YOR070C_S288C | rna-NM_001183489.1_S288C | cds-NP_014713.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000091.1:29826-31739:+ | gene-YOR070C_SA1 | rna-NM_001183489.1_SA1 | cds-NP_014713.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:439438-441351:- | gene-YOR070C_ThermosaccDry | rna-NM_001183489.1_ThermosaccDry | cds-NP_014713.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:440677-442590:- | gene-YOR070C_VR1 | rna-NM_001183489.1_VR1 | cds-NP_014713.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:173438-175351:- | gene-YOR070C_ZTW1 | rna-NM_001183489.1_ZTW1 | cds-NP_014713.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:445010-446923:- | gene-YOR070C_Sparadoxus | rna-NM_001183489.1_Sparadoxus | cds-NP_014713.1_Sparadoxus | 91.4 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |