Gene name: GTB1
Reference locus (S288C): YDR221W
Gene biotype: protein_coding
Description: Glucosidase II beta subunit, forms a complex with alpha subunit Rot2p; involved in removal of two glucose residues from N-linked glycans during glycoprotein biogenesis in the ER; relocalizes from ER to cytoplasm upon DNA replication stress
Top 10 interactors (score): ROT2 (0.999); CWH41 (0.913); SEC63 (0.909); MNS1 (0.9); KRE5 (0.836); MRL1 (0.82); WBP1 (0.77); CNE1 (0.761); YOS9 (0.726); ISW1 (0.627); SWP1 (0.626); CSE1 (0.602); NAN1 (0.598); ENP1 (0.583); PRC1 (0.578); DPB11 (0.573); GPI11 (0.568); HRD3 (0.567); SEC16 (0.56); NAR1 (0.533)
Homologues (species, bitscore): PRKCSH (Homo sapiens, 85.5); Prkcsh (Mus musculus, 88.2); prkcsh (Danio rerio, 92.8); prkcsh (Xenopus tropicalis, 73.2); CG6453 (Drosophila melanogaster, 103.6); ZK1307.8 (Caenorhabditis elegans, 87.4); PSL4 (Arabidopsis thaliana, 73.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:864029-866137:+ | gene-YDR221W_AKU4011 | rna-NM_001180529.3_AKU4011 | cds-NP_010507.3_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:259695-261803:- | gene-YDR221W_BG1 | rna-NM_001180529.3_BG1 | cds-NP_010507.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:896351-898459:+ | gene-YDR221W_Bruggeman | rna-NM_001180529.3_Bruggeman | cds-NP_010507.3_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:883624-885732:+ | gene-YDR221W_CAT1 | rna-NM_001180529.3_CAT1 | cds-NP_010507.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:854381-856489:+ | gene-YDR221W_CBS1585 | rna-NM_001180529.3_CBS1585 | cds-NP_010507.3_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:883390-885498:+ | gene-YDR221W_CBS436 | rna-NM_001180529.3_CBS436 | cds-NP_010507.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:851140-853248:+ | gene-YDR221W_CBS6412 | rna-NM_001180529.3_CBS6412 | cds-NP_010507.3_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:881740-883848:+ | gene-YDR221W_CBS6413 | rna-NM_001180529.3_CBS6413 | cds-NP_010507.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:906132-908240:+ | gene-YDR221W_CENPK1137D | rna-NM_001180529.3_CENPK1137D | cds-NP_010507.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:864723-866831:+ | gene-YDR221W_EthanolRed | rna-NM_001180529.3_EthanolRed | cds-NP_010507.3_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:872924-875032:+ | gene-YDR221W_FaliES1 | rna-NM_001180529.3_FaliES1 | cds-NP_010507.3_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000348.1:36541-38649:- | gene-YDR221W_JAY291 | rna-NM_001180529.3_JAY291 | cds-NP_010507.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:882002-884110:+ | gene-YDR221W_MUCL30387 | rna-NM_001180529.3_MUCL30387 | cds-NP_010507.3_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:870256-872364:+ | gene-YDR221W_MUCL30388 | rna-NM_001180529.3_MUCL30388 | cds-NP_010507.3_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:855790-857898:+ | gene-YDR221W_MUCL39482 | rna-NM_001180529.3_MUCL39482 | cds-NP_010507.3_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:795071-797179:+ | gene-YDR221W_MUCL42920 | rna-NM_001180529.3_MUCL42920 | cds-NP_010507.3_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:907253-909361:+ | gene-YDR221W_NCIM3186 | rna-NM_001180529.3_NCIM3186 | cds-NP_010507.3_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:859455-861563:+ | gene-YDR221W_NCYC1407 | rna-NM_001180529.3_NCYC1407 | cds-NP_010507.3_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:875681-877789:+ | gene-YDR221W_PE2H3 | rna-NM_001180529.3_PE2H3 | cds-NP_010507.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:880963-883071:+ | gene-YDR221W_PE2H4 | rna-NM_001180529.3_PE2H4 | cds-NP_010507.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:907330-909438:+ | gene-YDR221W_S288C | rna-NM_001180529.3_S288C | cds-NP_010507.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:113437-115545:+ | gene-YDR221W_SA1 | rna-NM_001180529.3_SA1 | cds-NP_010507.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:871080-873188:+ | gene-YDR221W_ThermosaccDry | rna-NM_001180529.3_ThermosaccDry | cds-NP_010507.3_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:886286-888394:+ | gene-YDR221W_VR1 | rna-NM_001180529.3_VR1 | cds-NP_010507.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:133798-135906:+ | gene-YDR221W_ZTW1 | rna-NM_001180529.3_ZTW1 | cds-NP_010507.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:876215-878323:+ | gene-YDR221W_Sparadoxus | rna-NM_001180529.3_Sparadoxus | cds-NP_010507.3_Sparadoxus | 85.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |