Gene name: GSP1
Reference locus (S288C): YLR293C
Gene biotype: protein_coding
Description: GTP-binding nuclear protein GSP1/CNR1; Ran GTPase; GTP binding protein (mammalian Ranp homolog) involved in the maintenance of nuclear organization, RNA processing and transport; regulated by Srm1p, Rna1p, Yrb1p, Yrb2p, Yrp4p, Yrb30p, Cse1p and Kap95p; GSP1 has a paralog, GSP2, that arose from the whole genome duplication; Belongs to the small GTPase superfamily. Ran family
Top 10 interactors (score): NUP2 (0.999); SRM1 (0.999); YRB1 (0.999); NTF2 (0.999); MSN5 (0.999); KAP95 (0.999); CRM1 (0.999); CSE1 (0.999); KAP123 (0.999); RNA1 (0.999); LOS1 (0.998); YRB2 (0.998); MOG1 (0.997); PSE1 (0.993); KAP122 (0.992); KAP104 (0.989); SRP1 (0.986); NMD5 (0.982); SMT3 (0.981); NSP1 (0.979)
Homologues (species, bitscore): RAN (Homo sapiens, 368.2); Ran (Mus musculus, 368.2); ran (Danio rerio, 363.6); ran (Xenopus tropicalis, 367.5); Ran (Drosophila melanogaster, 363.2); ran-1 (Caenorhabditis elegans, 371.7); RAN3 (Arabidopsis thaliana, 351.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:669573-670232:- | gene-YLR293C_AKU4011 | rna-NM_001182181.1_AKU4011 | cds-NP_013396.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:62459-63118:+ | gene-YLR293C_BG1 | rna-NM_001182181.1_BG1 | cds-NP_013396.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:704753-705412:- | gene-YLR293C_Bruggeman | rna-NM_001182181.1_Bruggeman | cds-NP_013396.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:703321-703980:- | gene-YLR293C_CAT1 | rna-NM_001182181.1_CAT1 | cds-NP_013396.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:704509-705168:- | gene-YLR293C_CBS1585 | rna-NM_001182181.1_CBS1585 | cds-NP_013396.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:689100-689759:- | gene-YLR293C_CBS436 | rna-NM_001182181.1_CBS436 | cds-NP_013396.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:667142-667801:- | gene-YLR293C_CBS6412 | rna-NM_001182181.1_CBS6412 | cds-NP_013396.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:705174-705833:- | gene-YLR293C_CBS6413 | rna-NM_001182181.1_CBS6413 | cds-NP_013396.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:705368-706027:- | gene-YLR293C_CENPK1137D | rna-NM_001182181.1_CENPK1137D | cds-NP_013396.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:662852-663511:- | gene-YLR293C_EthanolRed | rna-NM_001182181.1_EthanolRed | cds-NP_013396.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:692052-692711:- | gene-YLR293C_FaliES1 | rna-NM_001182181.1_FaliES1 | cds-NP_013396.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000359.1:13061-13720:+ | gene-YLR293C_JAY291 | rna-NM_001182181.1_JAY291 | cds-NP_013396.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:704644-705303:- | gene-YLR293C_MUCL30387 | rna-NM_001182181.1_MUCL30387 | cds-NP_013396.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:710227-710886:- | gene-YLR293C_MUCL30388 | rna-NM_001182181.1_MUCL30388 | cds-NP_013396.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:705740-706399:- | gene-YLR293C_MUCL39482 | rna-NM_001182181.1_MUCL39482 | cds-NP_013396.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:700895-701554:- | gene-YLR293C_MUCL42920 | rna-NM_001182181.1_MUCL42920 | cds-NP_013396.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:720745-721404:- | gene-YLR293C_NCIM3186 | rna-NM_001182181.1_NCIM3186 | cds-NP_013396.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:715071-715730:- | gene-YLR293C_NCYC1407 | rna-NM_001182181.1_NCYC1407 | cds-NP_013396.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:702867-703526:- | gene-YLR293C_PE2H3 | rna-NM_001182181.1_PE2H3 | cds-NP_013396.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:702611-703270:- | gene-YLR293C_PE2H4 | rna-NM_001182181.1_PE2H4 | cds-NP_013396.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:720771-721430:- | gene-YLR293C_S288C | rna-NM_001182181.1_S288C | cds-NP_013396.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000039.1:63257-63916:+ | gene-YLR293C_SA1 | rna-NM_001182181.1_SA1 | cds-NP_013396.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:693947-694606:- | gene-YLR293C_ThermosaccDry | rna-NM_001182181.1_ThermosaccDry | cds-NP_013396.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:705837-706496:- | gene-YLR293C_VR1 | rna-NM_001182181.1_VR1 | cds-NP_013396.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:32383-33042:- | gene-YLR293C_ZTW1 | rna-NM_001182181.1_ZTW1 | cds-NP_013396.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:679999-680658:- | gene-YLR293C_Sparadoxus | rna-NM_001182181.1_Sparadoxus | cds-NP_013396.1_Sparadoxus | 96.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |