GRE3 (YHR104W)


Gene profile

Gene name: GRE3
Reference locus (S288C): YHR104W
Gene biotype: protein_coding

Description: Trifunctional aldehyde reductase/xylose reductase/glucose 1-dehydrogenase (nadp(+)); Aldose reductase; involved in methylglyoxal, d-xylose, arabinose, and galactose metabolism; stress induced (osmotic, ionic, oxidative, heat shock, starvation and heavy metals); regulated by the HOG pathway; protein abundance increases in response to DNA replication stress

Top 10 interactors (score): XYL2 (0.998); SOR1 (0.993); SOR2 (0.987); XKS1 (0.983); PGM2 (0.963); TAL1 (0.963); GLO1 (0.962); HSP104 (0.95); DCS1 (0.934); SOL4 (0.931); PNC1 (0.93); RTC3 (0.928); GLK1 (0.927); TFS1 (0.926); TKL1 (0.923); GAD1 (0.922); TSL1 (0.922); MSC1 (0.903); RPE1 (0.902); PRX1 (0.901)

Homologues (species, bitscore): AKR1A1 (Homo sapiens, 226.9); Akr1a1 (Mus musculus, 227.3); akr1b1 (Danio rerio, 234.2); akr1a1 (Xenopus tropicalis, 222.6); CG6083 (Drosophila melanogaster, 214.2); Y39G8B.1 (Caenorhabditis elegans, 196.8); AT2G21250 (Arabidopsis thaliana, 208.8)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005302.1:310323-311306:+ gene-YHR104W_AKU4011 rna-NM_001179234.1_AKU4011 cds-NP_011972.1_AKU4011 99.6 100.0 Verified 1 1 1 True True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000141.1:206597-207580:- gene-YHR104W_BG1 rna-NM_001179234.1_BG1 cds-NP_011972.1_BG1 99.7 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005510.1:317619-318602:+ gene-YHR104W_Bruggeman rna-NM_001179234.1_Bruggeman cds-NP_011972.1_Bruggeman 100.0 100.0 Verified 1 1 1 True True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005526.1:312764-313747:+ gene-YHR104W_CAT1 rna-NM_001179234.1_CAT1 cds-NP_011972.1_CAT1 99.8 100.0 Verified 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005366.1:309350-310333:+ gene-YHR104W_CBS1585 rna-NM_001179234.1_CBS1585 cds-NP_011972.1_CBS1585 99.6 100.0 Verified 1 1 1 True True False False False
CBS436 GCA_001738355.1 Sake Asia CM005350.1:306707-307690:+ gene-YHR104W_CBS436 rna-NM_001179234.1_CBS436 cds-NP_011972.1_CBS436 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005334.1:311158-312141:+ gene-YHR104W_CBS6412 rna-NM_001179234.1_CBS6412 cds-NP_011972.1_CBS6412 99.6 100.0 Mismatch 1 1 1 True True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005318.1:310374-311357:+ gene-YHR104W_CBS6413 rna-NM_001179234.1_CBS6413 cds-NP_011972.1_CBS6413 99.6 100.0 Verified 1 1 1 True True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001529.1:316580-317563:+ gene-YHR104W_CENPK1137D rna-NM_001179234.1_CENPK1137D cds-NP_011972.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005478.1:369234-370217:+ gene-YHR104W_EthanolRed rna-NM_001179234.1_EthanolRed cds-NP_011972.1_EthanolRed 99.7 100.0 Verified 1 1 1 True True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005542.1:310722-311705:+ gene-YHR104W_FaliES1 rna-NM_001179234.1_FaliES1 cds-NP_011972.1_FaliES1 99.7 100.0 Verified 1 1 1 True True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000045.1:31304-32287:+ gene-YHR104W_JAY291 rna-NM_001179234.1_JAY291 cds-NP_011972.1_JAY291 99.7 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005414.1:317344-318327:+ gene-YHR104W_MUCL30387 rna-NM_001179234.1_MUCL30387 cds-NP_011972.1_MUCL30387 99.7 100.0 Verified 1 1 1 True True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005446.1:316997-317980:+ gene-YHR104W_MUCL30388 rna-NM_001179234.1_MUCL30388 cds-NP_011972.1_MUCL30388 100.0 100.0 Verified 1 1 1 True True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005286.1:309687-310670:+ gene-YHR104W_MUCL39482 rna-NM_001179234.1_MUCL39482 cds-NP_011972.1_MUCL39482 99.6 100.0 Verified 1 1 1 True True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005430.1:315939-316922:+ gene-YHR104W_MUCL42920 rna-NM_001179234.1_MUCL42920 cds-NP_011972.1_MUCL42920 100.0 100.0 Verified 1 1 1 True True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011817.1:323291-324274:+ gene-YHR104W_NCIM3186 rna-NM_001179234.1_NCIM3186 cds-NP_011972.1_NCIM3186 99.5 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005270.1:311896-312879:+ gene-YHR104W_NCYC1407 rna-NM_001179234.1_NCYC1407 cds-NP_011972.1_NCYC1407 99.6 100.0 Verified 1 1 1 True True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994147.1:311340-312323:+ gene-YHR104W_PE2H3 rna-NM_001179234.1_PE2H3 cds-NP_011972.1_PE2H3 99.7 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999879.1:318767-319750:+ gene-YHR104W_PE2H4 rna-NM_001179234.1_PE2H4 cds-NP_011972.1_PE2H4 99.7 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001140.6:323409-324392:+ gene-YHR104W_S288C rna-NM_001179234.1_S288C cds-NP_011972.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000014.1:34584-35567:- gene-YHR104W_SA1 rna-NM_001179234.1_SA1 cds-NP_011972.1_SA1 99.7 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005494.1:311805-312788:+ gene-YHR104W_ThermosaccDry rna-NM_001179234.1_ThermosaccDry cds-NP_011972.1_ThermosaccDry 99.7 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005462.1:319428-320411:+ gene-YHR104W_VR1 rna-NM_001179234.1_VR1 cds-NP_011972.1_VR1 100.0 100.0 Verified 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000017.1:302839-303821:+ gene-YHR104W_ZTW1 rna-NM_001179234.1_ZTW1 cds-NP_011972.1_ZTW1 99.4 99.8 Unannotated 1 1 0 False False False True False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047494.1:308487-309470:+ gene-YHR104W_Sparadoxus rna-NM_001179234.1_Sparadoxus cds-NP_011972.1_Sparadoxus 91.2 100.0 Verified 1 1 1 False True False False False

Additional files