Gene name: GPI18
Reference locus (S288C): YBR004C
Gene biotype: protein_coding
Description: Gpi-anchor transamidase gpi18; GPI mannosyltransferase 2; Functional ortholog of human PIG-V; PIG-V is a mannosyltransferase that transfers the second mannose in glycosylphosphatidylinositol biosynthesis; the authentic, non-tagged protein was localized to mitochondria; Belongs to the PIGV family
Top 10 interactors (score): GPI14 (0.999); GPI10 (0.999); PBN1 (0.991); MCD4 (0.989); PGA1 (0.987); GPI12 (0.984); SMP3 (0.981); GPI13 (0.977); MSC7 (0.971); GPI19 (0.969); GPI8 (0.967); SPT14 (0.959); GPI1 (0.942); DPM1 (0.94); GPI11 (0.932); GAA1 (0.919); ALG3 (0.892); IMG1 (0.89); HOC1 (0.88); GPI16 (0.875)
Homologues (species, bitscore): Pigv (Mus musculus, 57.0); pigv (Danio rerio, 60.5); pigv (Xenopus tropicalis, 63.9); PIG-V (Drosophila melanogaster, 60.1); AT1G11880 (Arabidopsis thaliana, 72.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:232752-234053:- | gene-YBR004C_AKU4011 | rna-NM_001178352.2_AKU4011 | cds-NP_009558.2_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:222860-224161:- | gene-YBR004C_BG1 | rna-NM_001178352.2_BG1 | cds-NP_009558.2_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:233451-234752:- | gene-YBR004C_Bruggeman | rna-NM_001178352.2_Bruggeman | cds-NP_009558.2_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:235742-237043:- | gene-YBR004C_CAT1 | rna-NM_001178352.2_CAT1 | cds-NP_009558.2_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:224790-226091:- | gene-YBR004C_CBS1585 | rna-NM_001178352.2_CBS1585 | cds-NP_009558.2_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:233032-234333:- | gene-YBR004C_CBS436 | rna-NM_001178352.2_CBS436 | cds-NP_009558.2_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:323292-324593:- | gene-YBR004C_CBS6412 | rna-NM_001178352.2_CBS6412 | cds-NP_009558.2_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:230155-231456:- | gene-YBR004C_CBS6413 | rna-NM_001178352.2_CBS6413 | cds-NP_009558.2_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:244052-245353:- | gene-YBR004C_CENPK1137D | rna-NM_001178352.2_CENPK1137D | cds-NP_009558.2_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:359750-361051:- | gene-YBR004C_EthanolRed | rna-NM_001178352.2_EthanolRed | cds-NP_009558.2_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:247846-249147:- | gene-YBR004C_FaliES1 | rna-NM_001178352.2_FaliES1 | cds-NP_009558.2_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000048.1:48451-49752:+ | gene-YBR004C_JAY291 | rna-NM_001178352.2_JAY291 | cds-NP_009558.2_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:233809-235110:- | gene-YBR004C_MUCL30387 | rna-NM_001178352.2_MUCL30387 | cds-NP_009558.2_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:233749-235050:- | gene-YBR004C_MUCL30388 | rna-NM_001178352.2_MUCL30388 | cds-NP_009558.2_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:224771-226072:- | gene-YBR004C_MUCL39482 | rna-NM_001178352.2_MUCL39482 | cds-NP_009558.2_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:232211-233512:- | gene-YBR004C_MUCL42920 | rna-NM_001178352.2_MUCL42920 | cds-NP_009558.2_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:244163-245464:- | gene-YBR004C_NCIM3186 | rna-NM_001178352.2_NCIM3186 | cds-NP_009558.2_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:225946-227247:- | gene-YBR004C_NCYC1407 | rna-NM_001178352.2_NCYC1407 | cds-NP_009558.2_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:238107-239408:- | gene-YBR004C_PE2H3 | rna-NM_001178352.2_PE2H3 | cds-NP_009558.2_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:235773-237074:- | gene-YBR004C_PE2H4 | rna-NM_001178352.2_PE2H4 | cds-NP_009558.2_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:244366-245667:- | gene-YBR004C_S288C | rna-NM_001178352.2_S288C | cds-NP_009558.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000037.1:57106-58407:+ | gene-YBR004C_SA1 | rna-NM_001178352.2_SA1 | cds-NP_009558.2_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:247555-248856:- | gene-YBR004C_ThermosaccDry | rna-NM_001178352.2_ThermosaccDry | cds-NP_009558.2_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:229448-230749:- | gene-YBR004C_VR1 | rna-NM_001178352.2_VR1 | cds-NP_009558.2_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:223536-224837:- | gene-YBR004C_ZTW1 | rna-NM_001178352.2_ZTW1 | cds-NP_009558.2_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:259238-260539:- | gene-YBR004C_Sparadoxus | rna-NM_001178352.2_Sparadoxus | cds-NP_009558.2_Sparadoxus | 89.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |